Some Help

Query: NC_004578:2797493:2817337 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2817337, End: 2817828, Length: 492

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:110633:131448131448131930483Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-42171
NC_004605:1092476:110125511012551101710456Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein2e-2098.2
NC_008313:691692:707107707107707613507Ralstonia eutropha H16 chromosome 1, complete sequencehypothetical protein1e-1995.9
NC_007511:1094050:109948710994871099990504Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein3e-1787.4
NC_010805:1576735:159764315976431598146504Burkholderia multivorans ATCC 17616 chromosome 2, completeprobable lipoprotein7e-1683.2
NC_010086:871723:877158877158877661504Burkholderia multivorans ATCC 17616 chromosome 2, completeconserved hypothetical protein7e-1683.2
NC_008391:271254:276714276714277220507Burkholderia cepacia AMMD chromosome 2, complete sequencehypothetical protein3e-1580.9
NC_007645:4423507:444662644466264447105480Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-1064.7
NC_014355:1865003:188021718802171880660444Candidatus Nitrospira defluvii, complete genomehypothetical protein3e-1064.7
NC_010552:592154:615507615507616025519Burkholderia ambifaria MC40-6 chromosome 2, complete sequencehypothetical protein2e-0961.6
NC_017192:2216914:223597122359712236432462Arcobacter sp. L, complete genomehypothetical protein7e-0959.7
NC_005126:349658:393634393634394200567Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-0857.8
NC_009778:1956225:197273719727371973258522Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-0857
NC_011283:2103500:212220521222052122741537Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion lipoprotein1e-0755.8
NC_013282:1256769:127747512774751277978504Cronobacter turicensis, complete genomehypothetical protein2e-0755.1
NC_012721:710887:729677729677730213537Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein2e-0755.1
NC_012962:293976:313385313385313939555Photorhabdus asymbiotica, complete genomehypothetical protein2e-0755.1
NC_007348:2011957:203372120337212034359639Ralstonia eutropha JMP134 chromosome 2, complete sequenceputative Uncharacterized protein conserved in bacteria4e-0754.3
NC_009255:1250939:127824612782461278896651Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein6e-0753.5
NC_008570:1986466:200520120052012005716516Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative lipoprotein9e-0752.8
NC_013892:274297:276634276634277188555Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-0652.8
NC_005773:106000:150125150125150880756Pseudomonas syringae pv. phaseolicola 1448A, complete genomelipoprotein, putative1e-0652.4
NC_014323:4619344:463604446360444636673630Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein1e-0652.4
NC_014228:4331327:434968243496824350236555Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable lipoprotein of SST VI cluster)3e-0651.2