Pre_GI: BLASTP Hits

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Query: NC_004578:2797493:2811942 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2811942, End: 2812949, Length: 1008

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009656:3733913:3739524373952437405311008Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-117422
NC_017192:2216914:224035322403532241345993Arcobacter sp. L, complete genomehypothetical protein1e-42174
NC_016822:267758:2667122667122677941083Shigella sonnei 53G, complete genomehypothetical protein3e-41169
NC_011274:1129686:1128634112863411297281095Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-40165
NC_002947:4604582:4606312460631246073281017Pseudomonas putida KT2440, complete genomehypothetical protein2e-39163
NC_013592:1424560:1442701144270114437141014Dickeya dadantii Ech586, complete genometype VI secretion protein, VC_A0111 family3e-39162
NC_014228:4331327:4351521435152143525731053Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of the SST VI cluster)7e-38157
NC_013421:1143500:116200111620011162999999Pectobacterium wasabiae WPP163, complete genometype VI secretion protein, VC_A0111 family2e-37156
NC_008253:257059:2570592570592581081050Escherichia coli 536, complete genomehypothetical protein2e-37156
NC_011751:256830:2558172558172568661050Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-37156
NC_013892:274297:2742972742972753491053Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-37155
NC_011745:258727:2577142577142587631050Escherichia coli ED1a chromosome, complete genomehypothetical protein6e-37154
NC_008570:1986466:200289620028962003894999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein8e-37154
NC_015968:4117835:414967541496754150631957Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein2e-36153
NC_012913:1832500:184208218420821843080999Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion protein, family4e-36152
NC_008563:258725:2577122577122587611050Escherichia coli APEC O1, complete genomehypothetical protein3e-36152
NC_007946:258747:2577342577342587831050Escherichia coli UTI89, complete genomehypothetical protein3e-36152
NC_011742:258746:2577332577332587821050Escherichia coli S88 chromosome, complete genomehypothetical protein3e-36152
NC_009348:2631759:2630791263079126317951005Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein4e-34145
NC_005126:349658:395492395492396472981Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-28127
NC_014355:1865003:1896587189658718976511065Candidatus Nitrospira defluvii, complete genomehypothetical protein3e-23109
NC_002947:3492379:3491345349134534924151071Pseudomonas putida KT2440, complete genomehypothetical protein2e-22106
NC_012779:2619871:2637980263798026390051026Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-20100
NC_007963:2555012:255402325540232555015993Chromohalobacter salexigens DSM 3043, complete genomeprotein of unknown function DUF13052e-20100
NC_010322:3084834:3104873310487331059431071Pseudomonas putida GB-1 chromosome, complete genometype VI secretion protein4e-2099.4
NC_017075:2689014:2707126270712627081961071Rubrivivax gelatinosus IL144, complete genomehypothetical protein2e-1996.7
NC_012997:1689583:1703569170356917046841116Teredinibacter turnerae T7901, complete genometype VI secretion protein, VC_A0111 family2e-1996.3
NC_008390:407315:4308534308534319531101Burkholderia cepacia AMMD chromosome 1, complete sequenceprotein of unknown function DUF13054e-1995.9
NC_010465:2820500:2840999284099928420841086Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein, VC_A0111 family5e-1995.5
NC_004088:2937077:2960107296010729611921086Yersinia pestis KIM, complete genomehypothetical protein6e-1995.1
NC_014029:1760948:1760948176094817620331086Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-1995.1
NC_017168:3948514:3971543397154339726281086Yersinia pestis A1122 chromosome, complete genomehypothetical protein6e-1995.1
NC_017265:2557476:2580505258050525815901086Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein6e-1995.1
NC_009708:2788855:2810553281055328116381086Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein4e-1892.4
NC_009381:1655731:1677437167743716785221086Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-1892.4
NC_007510:409843:4298524298524309521101Burkholderia sp. 383 chromosome 1, complete sequenceprotein of unknown function DUF13059e-1891.3
NC_017060:125480:1453521453521464341083Rahnella aquatilis HX2 plasmid PRA1, complete sequencetype VI secretion protein1e-1687.4
NC_015062:130359:1485221485221496041083Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencetype VI secretion protein, VC_A0111 family1e-1687.4
NC_005126:3812054:3811002381100238120901089Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-1685.5
NC_010084:3173757:3200421320042132015211101Burkholderia multivorans ATCC 17616 chromosome 1, completetype VI secretion protein7e-1685.1
NC_009255:2044291:2044291204429120453071017Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein1e-1584.3
NC_009255:1250939:1277183127718312781991017Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein1e-1584.3
NC_014306:4376012:4395682439568243967071026Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-1583.6
NC_011283:2103500:2121133212113321222241092Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion protein2e-1480.1
NC_010501:3575726:3575726357572635768231098Pseudomonas putida W619, complete genometype VI secretion protein, VC_A0111 family2e-1480.1
NC_008314:2744553:2743552274355227445981047Ralstonia eutropha H16 chromosome 2, complete sequencequinoprotein dehydrogenase3e-1479.7
NC_012962:3568046:3575095357509535761471053Photorhabdus asymbiotica, complete genomehypothetical protein1e-1377.4
NC_011742:3057444:3060870306087030619581089Escherichia coli S88 chromosome, complete genomehypothetical protein2e-1377
NC_013971:465318:4670514670514681331083Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein2e-1376.6
NC_008253:2965573:2969200296920029702791080Escherichia coli 536, complete genomehypothetical protein3e-1376.3
NC_014323:4619344:4628948462894846300361089Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein4e-1375.9
NC_014121:1822895:1842623184262318437081086Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein ImpH5e-1375.5
NC_010625:670482:6729496729496740371089Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetype VI secretion protein, VC_A0111 family6e-1375.1
NC_014837:3766426:3787464378746437885341071Pantoea sp. At-9b chromosome, complete genometype VI secretion protein6e-1375.1
NC_009778:1956225:1973284197328419743661083Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-1374.7
NC_012962:4427000:4432530443253044335611032Photorhabdus asymbiotica, complete genomehypothetical protein1e-1274.3
NC_015136:813701:8148068148068177632958Burkholderia sp. CCGE1001 chromosome 1, complete sequencetype VI secretion protein1e-1273.9
NC_014539:3619511:3618414361841436195141101Burkholderia sp. CCGE1003 chromosome 1, complete sequencetype VI secretion protein3e-1273.2
NC_011988:1036618:1063957106395710649671011Agrobacterium vitis S4 chromosome 2, complete genomehypothetical protein5e-1272.4
NC_011283:942594:9435379435379446191083Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion protein4e-1272.4
NC_009648:3476000:3494988349498834960701083Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein6e-1272
NC_013282:2026083:2055691205569120567731083Cronobacter turicensis, complete genomehypothetical protein9e-1271.2
NC_016626:400080:4282424282424293061065Burkholderia sp. YI23 plasmid byi_1p, complete sequencetype VI secretion protein1e-1170.5
NC_016816:1823127:1842920184292018439691050Pantoea ananatis LMG 5342, complete genometype VI secretion system, core protein2e-1170.1
NC_012721:1395417:1394299139429913954201122Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein5e-1168.9
NC_018868:973379:9849389849389860801143Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-1067.4
NC_014306:679888:6994466994467005101065Erwinia billingiae Eb661, complete genomeconserved uncharacterized protein2e-1067
NC_020064:2921809:2942381294238129434511071Serratia marcescens FGI94, complete genometype VI secretion protein, VC_A0111 family5e-1065.5
NC_012731:2302974:2326872232687223279571086Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein6e-1065.5
NC_010552:592154:6143696143696154931125Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetype VI secretion protein, VC_A0111 family8e-1064.7
NC_009832:3313058:3313058331305833141311074Serratia proteamaculans 568, complete genomeprotein of unknown function DUF13052e-0860.1
NC_016514:2713834:2771045277104527720881044Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein3e-0860.1
NC_013855:196778:2011962011962022331038Azospirillum sp. B510 plasmid pAB510a, complete sequencehypothetical protein4e-0859.3
NC_015663:4129685:4146811414681141478541044Enterobacter aerogenes KCTC 2190 chromosome, complete genometype VI secretion system protein ImpH1e-0757.8
NC_007348:2011957:2032659203265920337081050Ralstonia eutropha JMP134 chromosome 2, complete sequenceProtein of unknown function DUF13051e-0757.4
NC_009802:114749:141796141796142692897Campylobacter concisus 13826, complete genome3e-0756.6
NC_007952:495000:5085315085315095891059Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein3e-0756.2
NC_007511:1780500:1799185179918518002881104Burkholderia sp. 383 chromosome 2, complete sequenceprotein of unknown function DUF13058e-0755.1
NC_013282:1256769:1263587126358712646511065Cronobacter turicensis, complete genomehypothetical protein2e-0653.5