Pre_GI: BLASTP Hits

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Query: NC_004578:2797493:2809686 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2809686, End: 2810093, Length: 408

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009656:3733913:374250137425013742908408Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-29126
NC_008253:257059:259919259919260344426Escherichia coli 536, complete genomehypothetical protein8e-1269.3
NC_008570:1986466:200073120007312001162432Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-1168.6
NC_011742:258746:260593260593261018426Escherichia coli S88 chromosome, complete genomehypothetical protein2e-1167.8
NC_011745:258727:260574260574260999426Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-1167.8
NC_007946:258747:260594260594261019426Escherichia coli UTI89, complete genomehypothetical protein2e-1167.8
NC_008563:258725:260572260572260997426Escherichia coli APEC O1, complete genomehypothetical protein2e-1167.8
NC_011751:256830:258677258677259102426Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-1064.7
NC_009348:2631759:263352926335292633960432Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-1064.7
NC_005126:349658:398357398357398797441Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein9e-1062.4
NC_013592:1424560:144053714405371440968432Dickeya dadantii Ech586, complete genometype VI secretion system lysozyme-related protein1e-0858.5
NC_014837:3766426:378651337865133786953441Pantoea sp. At-9b chromosome, complete genometype VI secretion system lysozyme-like protein2e-0857.8
NC_012962:4427000:443157544315754432009435Photorhabdus asymbiotica, complete genomehypothetical protein5e-0856.6
NC_015968:4117835:415242541524254152853429Enterobacter asburiae LF7a chromosome, complete genometype VI secretion system lysozyme-like protein5e-0856.2
NC_016822:267758:269612269612270025414Shigella sonnei 53G, complete genometype VI secretion system lysozyme-like protein1e-0755.5
NC_013421:1143500:115983711598371160268432Pectobacterium wasabiae WPP163, complete genometype VI secretion system lysozyme-related protein3e-0753.9
NC_013961:3269368:329308232930823293534453Erwinia amylovora, complete genomeCOG3518: putative type VI secretion system, core protein3e-0753.9
NC_013971:465318:477848477848478300453Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-0753.9
NC_016514:1627664:163883616388361639285450Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein2e-0651.2
NC_011283:942594:942594942594943019426Klebsiella pneumoniae 342 chromosome, complete genometype VI secretion system lysozyme-like protein2e-0651.2
NC_011742:3057444:306247930624793062907429Escherichia coli S88 chromosome, complete genomehypothetical protein3e-0650.8
NC_007946:3125577:313061231306123131040429Escherichia coli UTI89, complete genomehypothetical protein3e-0650.8
NC_016590:1183470:120992912099291210387459Burkholderia sp. YI23 chromosome 3, complete sequencehypothetical protein3e-0650.4
NC_009648:3476000:349658834965883497013426Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein6e-0649.7
NC_009381:1655731:167642916764291676881453Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-0649.7
NC_009708:2788855:280954528095452809997453Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein6e-0649.7
NC_014029:1760948:176258917625891763041453Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-0649.7
NC_017168:3948514:397053539705353970987453Yersinia pestis A1122 chromosome, complete genomehypothetical protein6e-0649.7
NC_017265:2557476:257949725794972579949453Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein6e-0649.7
NC_010465:2820500:283999128399912840443453Yersinia pseudotuberculosis YPIII, complete genometype VI secretion system lysozyme-related protein6e-0649.7
NC_017060:125480:155976155976156407432Rahnella aquatilis HX2 plasmid PRA1, complete sequencetype VI secretion system lysozyme-like protein6e-0649.7
NC_008253:2965573:297080029708002971228429Escherichia coli 536, complete genomehypothetical protein7e-0649.3