Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:2797493:2807021 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2807021, End: 2807629, Length: 609

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009656:3733913:3744965374496537465211557Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-48191
NC_007348:2011957:2029244202924420308181575Ralstonia eutropha JMP134 chromosome 2, complete sequenceImpA, N-terminal3e-1168.2
NC_014118:1171411:1171411117141111729971587Burkholderia sp. CCGE1002 chromosome chromosome 2, completetype VI secretion-associated protein, VC_A0119 family6e-1167.4
NC_014837:3766426:3790283379028337918601578Pantoea sp. At-9b chromosome, complete genometype VI secretion-associated protein3e-1065.1
NC_008740:4109000:4129370412937041308181449Marinobacter aquaeolei VT8, complete genomeImpA domain protein3e-1064.7
NC_007517:306508:3065083065083088802373Geobacter metallireducens GS-15, complete genomeImpA-like5e-1064.3
NC_012731:2302974:2321926232192623235241599Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein5e-0961.2
NC_012962:4427000:4435406443540644370071602Photorhabdus asymbiotica, complete genomehypothetical protein5e-0961.2
NC_009648:1487692:1508599150859915101971599Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein5e-0960.8
NC_010552:592154:6109656109656125481584Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetype VI secretion-associated protein, VC_A0119 family9e-0960.1
NC_012721:1395417:1397244139724413988301587Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein1e-0859.3
NC_010465:2820500:2845578284557828471791602Yersinia pseudotuberculosis YPIII, complete genometype VI secretion-associated protein, VC_A0119 family7e-0857.4
NC_009708:2788855:2815051281505128166521602Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeImpA domain-containing protein7e-0857.4
NC_009381:1682000:1682016168201616836171602Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein8e-0857
NC_013956:4579759:4578161457816145797621602Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-0755.5
NC_014121:1822895:1838342183834218399401599Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein VasJ4e-0754.7
NC_008563:3119284:3139452313945231410891638Escherichia coli APEC O1, complete genomehypothetical protein1e-0653.1
NC_005126:349658:3859733859733874061434Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-0651.6
NC_010501:3575726:3578580357858035801661587Pseudomonas putida W619, complete genometype VI secretion-associated protein, VC_A0119 family3e-0651.6
NC_005126:349658:360430360430361113684Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-0650.8
NC_016612:28451:5557555575571491575Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein6e-0650.8