Pre_GI: BLASTP Hits

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Query: NC_004578:2797493:2804890 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2804890, End: 2805876, Length: 987

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009656:3733913:3744965374496537465211557Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein4e-83308
NC_007517:306508:3065083065083088802373Geobacter metallireducens GS-15, complete genomeImpA-like1e-0860.8
NC_014310:811977:8334578334578344671011Ralstonia solanacearum PSI07 megaplasmid, complete sequencehypothetical protein1e-0757.4
NC_011274:1094379:1119872111987211211671296Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-0756.2
NC_011149:1077589:1098898109889811003101413Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion-associated protein, family4e-0755.8
NC_011205:1186097:1211580121158012129921413Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853ImpA domain-containing protein4e-0755.8
NC_003296:941920:9571539571539581661014Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein4e-0755.8
NC_012962:4427000:4435406443540644370071602Photorhabdus asymbiotica, complete genomehypothetical protein8e-0754.7