Pre_GI: BLASTP Hits

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Query: NC_004578:2671508:2687499 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2687499, End: 2688914, Length: 1416

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013172:542896:5445505445505459591410Brachybacterium faecium DSM 4810, complete genomeFAD/FMN-dependent dehydrogenase1e-35151
NC_007777:1296000:1296262129626212976981437Frankia sp. CcI3, complete genomeFAD linked oxidase-like2e-35150
NC_013743:1045488:1059392105939210607891398Haloterrigena turkmenica DSM 5511, complete genomeFAD linked oxidase domain protein2e-33144
NC_016631:3245501:3257293325729332586541362Granulicella mallensis MP5ACTX8 chromosome, complete genome(R)-6-hydroxynicotine oxidase3e-32140
NC_015676:1417456:1435753143575314371381386Methanosalsum zhilinae DSM 4017 chromosome, complete genomeFAD linked oxidase domain-containing protein5e-31135
NC_013947:3534209:3539213353921335405591347Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeFAD linked oxidase domain-containing protein3e-27123
NC_013743:1045488:1064476106447610659091434Haloterrigena turkmenica DSM 5511, complete genomeFAD linked oxidase domain protein1e-24115
NC_003888:4523500:4547977454797745495601584Streptomyces coelicolor A3(2), complete genomelipoprotein2e-22107
NC_017904:1725180:1728634172863417300521419Mycobacterium sp. MOTT36Y chromosome, complete genomeFAD linked oxidase domain-containing protein6e-22105
NC_011983:1746000:1758022175802217595991578Agrobacterium radiobacter K84 chromosome 2, complete genomeFAD-dependent oxidoreductase protein2e-21104
NC_016114:7282882:7314302731430273157381437Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeFAD linked oxidase domain-containing protein1e-20101
NC_009953:2808288:2808288280828828097181431Salinispora arenicola CNS-205 chromosome, complete genomeFAD linked oxidase domain-containing protein1e-1998.2
NC_009495:280000:2814312814312827621332Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeFAD-binding protein5e-1892.8
NC_015259:2757081:2759202275920227605571356Polymorphum gilvum SL003B-26A1 chromosome, complete genomeFAD linked oxidase-like protein8e-1789
NC_007333:39579:7051270512719091398Thermobifida fusca YX, complete genomeputative oxidoreductase, oxygen dependent, FAD-dependent protein1e-1688.2
NC_013530:423540:4431224431224453832262Xylanimonas cellulosilytica DSM 15894, complete genomeFAD linked oxidase domain protein3e-1686.7
NC_008228:4696338:4712685471268547141541470Pseudoalteromonas atlantica T6c, complete genomeTwin-arginine translocation pathway signal3e-1480.5
NC_011894:4013830:4020314402031440216601347Methylobacterium nodulans ORS 2060, complete genomeFAD linked oxidase domain protein5e-1376.3
NC_020272:3396800:3409736340973634110821347Bacillus amyloliquefaciens IT-45, complete genomeFAD-binding protein6e-1375.9
NC_010505:5077162:5112256511225651136441389Methylobacterium radiotolerans JCM 2831, complete genomeFAD linked oxidase domain protein2e-1274.3
NC_014551:483773:5007415007415020871347Bacillus amyloliquefaciens DSM 7, complete genomelipoprotein CotQ2e-1273.9
NC_009725:496443:5358995358995372451347Bacillus amyloliquefaciens FZB42, complete genomeYvdP4e-1273.2
NC_017188:461177:4882134882134895591347Bacillus amyloliquefaciens TA208 chromosome, complete genomelipoprotein CotQ3e-1273.2
NC_017190:466236:4866764866764880221347Bacillus amyloliquefaciens LL3 chromosome, complete genomelipoprotein CotQ3e-1273.2
NC_017191:467207:4942354942354955811347Bacillus amyloliquefaciens XH7 chromosome, complete genomespore coat protein; putative oxidoreductase3e-1273.2
NC_020410:495184:5199815199815213271347Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completespore coat protein; putative oxidoreductase5e-1272.8
NC_010180:213825:2159572159572172941338Bacillus weihenstephanensis KBAB4 plasmid pBWB401, completeFAD linked oxidase domain protein1e-1171.6
NC_019902:1681320:1686691168669116880521362Thioalkalivibrio nitratireducens DSM 14787, complete genomeFAD linked oxidase-like protein2e-1170.9
NC_010465:2820500:2867365286736528697822418Yersinia pseudotuberculosis YPIII, complete genomeFAD linked oxidase domain protein1e-1067.8
NC_010634:1755548:1762714176271417651312418Yersinia pseudotuberculosis PB1/+, complete genomeFAD linked oxidase domain-containing protein6e-1065.9
NC_006155:1756000:1762466176246617648832418Yersinia pseudotuberculosis IP 32953, complete genomeputative oxidoreductase6e-1065.9
NC_005810:1467772:1471979147197914744082430Yersinia pestis biovar Microtus str. 91001, complete genomeputative oxidoreductase3e-0963.9
NC_010159:3120642:3125242312524231276592418Yersinia pestis Angola, complete genomeFAD binding domain protein3e-0963.5
NC_008149:2802392:2838205283820528406222418Yersinia pestis Nepal516, complete genomeoxidoreductase3e-0963.5
NC_003143:1630000:1643068164306816454852418Yersinia pestis CO92, complete genomeputative oxidoreductase3e-0963.5
NC_008150:844727:8549738549738573902418Yersinia pestis Antiqua, complete genomeputative oxidoreductase3e-0963.5
NC_014029:1702338:1712584171258417150012418Yersinia pestis Z176003 chromosome, complete genomeputative oxidoreductase3e-0963.5
NC_017154:1644404:1654651165465116570682418Yersinia pestis D106004 chromosome, complete genomeputative oxidoreductase3e-0963.5
NC_017160:1628500:1635146163514616375632418Yersinia pestis D182038 chromosome, complete genomeputative oxidoreductase3e-0963.5
NC_017168:3977767:4013498401349840159152418Yersinia pestis A1122 chromosome, complete genomeputative oxidoreductase3e-0963.5
NC_009440:1045882:1045882104588210472401359Metallosphaera sedula DSM 5348 chromosome, complete genomeD-lactate dehydrogenase7e-0858.9
NC_008786:18688:3591335913373251413Verminephrobacter eiseniae EF01-2, complete genomeFAD linked oxidase domain protein1e-0655.1
NC_007503:1111457:1155204115520411565801377Carboxydothermus hydrogenoformans Z-2901, complete genomeglycolate oxidase, GlcD subunit2e-0654.7
NC_008705:1537080:1543663154366315450511389Mycobacterium sp. KMS, complete genomeFAD linked oxidase domain protein3e-0653.9
NC_008146:1535827:1539355153935515407431389Mycobacterium sp. MCS, complete genomeFAD linked oxidase-like protein3e-0653.9
NC_014831:2082304:2093372209337220947511380Thermaerobacter marianensis DSM 12885 chromosome, complete genomeFAD linked oxidase domain protein3e-0653.5
NC_019962:1676632:1676632167663216797723141Natrinema pellirubrum DSM 15624, complete genomeFAD/FMN-dependent dehydrogenase6e-0652.8
NC_012108:946314:9655979655979669701374Desulfobacterium autotrophicum HRM2, complete genomeGlcD16e-0652.8