Pre_GI: BLASTP Hits

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Query: NC_004578:2560473:2581120 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2581120, End: 2583375, Length: 2256

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:1817598:1859258185925818616482391Pseudomonas putida GB-1 chromosome, complete genomeputative PAS/PAC sensor protein0719
NC_020829:3050817:3059988305998830636233636Pseudomonas denitrificans ATCC 13867, complete genomeputative two-component system sensor kinase1e-147524
NC_016830:2168523:2188378218837821915783201Pseudomonas fluorescens F113 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-131470
NC_011663:180889:1964801964802000553576Shewanella baltica OS223 chromosome, complete genomemulti-sensor hybrid histidine kinase4e-118426
NC_009656:4527457:4540545454054545433912847Pseudomonas aeruginosa PA7 chromosome, complete genomevirulence sensor protein BvgS8e-76285
NC_008463:2654014:2661144266114426641222979Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative sensor/response regulator hybrid2e-66254
NC_011745:2751437:2759117275911727627103594Escherichia coli ED1a chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-64247
NC_004431:2747237:2766762276676227703553594Escherichia coli CFT073, complete genomeSensor protein evgS precursor5e-64246
NC_008253:2499735:2507809250780925114023594Escherichia coli 536, complete genomesensor protein EvgS precursor4e-64246
NC_007606:4182188:4192185419218541957783594Shigella dysenteriae Sd197, complete genomeputative sensor for regulator EvgA9e-64245
NC_011601:2614691:2640787264078726443803594Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA1e-63245
NC_013353:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA1e-63244
AP010958:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009 DNA, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA1e-63244
NC_010658:2529033:2539071253907125426643594Shigella boydii CDC 3083-94, complete genomesensor histidine kinase/response regulator EvgS2e-63244
NC_011750:2585015:2606176260617626097693594Escherichia coli IAI39 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA4e-63243
NC_007613:2376974:2386306238630623898993594Shigella boydii Sb227, complete genomeputative sensor for regulator EvgA4e-63243
CU928145:2708500:2716755271675527203483594Escherichia coli 55989 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-63243
NC_011748:2708500:2716755271675527203483594Escherichia coli 55989, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-63243
NC_008563:2610499:2618179261817926217723594Escherichia coli APEC O1, complete genomesensor protein EvgS precursor3e-63243
NC_007946:2625461:2645642264564226492353594Escherichia coli UTI89, complete genomesensor protein EvgS precursor3e-63243
NC_011742:2533500:2541274254127425448673594Escherichia coli S88 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-63243
CP002185:2659628:2668833266883326724263594Escherichia coli W, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-63242
CP002516:1419413:1433431143343114370243594Escherichia coli KO11, complete genomeHpt sensor hybrid histidine kinase9e-63242
NC_016902:1419413:1433431143343114370243594Escherichia coli KO11FL chromosome, complete genomeHpt sensor hybrid histidine kinase9e-63242
NC_008258:2473000:2481177248117724847703594Shigella flexneri 5 str. 8401, complete genomeputative sensor for regulator EvgA8e-63242
NC_009801:2639787:2647883264788326514763594Escherichia coli E24377A, complete genomesensor histidine kinase/response regulator EvgS8e-63242
CU928160:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA8e-63242
NC_011741:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA8e-63242
NC_004337:2478461:2487437248743724910303594Shigella flexneri 2a str. 301, complete genomeputative sensor for regulator EvgA6e-63242
NC_010468:1412791:1423116142311614267093594Escherichia coli ATCC 8739, complete genomeHpt sensor hybrid histidine kinase2e-62241
NC_012947:1363724:1374049137404913776423594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-62241
NC_012967:2409500:2418601241860124221943594Escherichia coli B str. REL606 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-62241
NC_004741:2456297:2465576246557624691693594Shigella flexneri 2a str. 2457T, complete genomeputative sensor for regulator EvgA1e-62241
NC_011415:2732000:2752482275248227560753594Escherichia coli SE11 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA1e-62241
NC_002695:3189425:3212511321251132161043594Escherichia coli O157:H7 str. Sakai, complete genomeputative sensor for regulator EvgA2e-62240
NC_013008:3231414:3271498327149832750913594Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-62240
NC_013941:2928000:2953577295357729571703594Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-62240
NC_009800:2505872:2515779251577925193723594Escherichia coli HS, complete genomesensor histidine kinase/response regulator EvgS5e-62239
NC_011751:2768864:2776961277696127805543594Escherichia coli UMN026 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA6e-62239
NC_007384:2587876:2597542259754226011353594Shigella sonnei Ss046, complete genomeputative sensor for regulator EvgA1e-61238
NC_016822:2678691:2688357268835726919503594Shigella sonnei 53G, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA1e-61238
NC_010498:2555706:2575404257540425787873384Escherichia coli SMS-3-5, complete genomesensor histidine kinase/response regulator EvgS6e-61236
NC_011353:3276734:3316837331683733202203384Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA6e-60233
NC_015224:1914833:1936266193626619399853720Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative virulence sensor protein4e-59230
CP002797:2472908:2486251248625124895713321Escherichia coli NA114, complete genomesensory histidine kinase3e-59230
NC_009792:4017510:4039164403916440423463183Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-57223
NC_014618:1103239:1108693110869311118783186Enterobacter cloacae SCF1 chromosome, complete genomeHpt sensor hybrid histidine kinase4e-57223
NC_017328:2516000:2525406252540625286723267Shigella flexneri 2002017 chromosome, complete genomeputative Sensor protein1e-54215
NC_009648:3803622:3838120383812038413623243Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative sensor protein EvgS12e-45184
NC_007520:2391675:2400483240048324047154233Thiomicrospira crunogena XCL-2, complete genomePAS/PAC sensor hybrid histidine kinase2e-39164
NC_007606:2353098:2361959236195923643542396Shigella dysenteriae Sd197, complete genome3e-34147
NC_007492:1193626:1193626119362611950141389Pseudomonas fluorescens PfO-1, complete genomePossible Sensor with PAS/PAC domain2e-32141
NC_015379:6226661:6228660622866062323793720Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative diguanylate cyclase/phosphodiesterase2e-26121
NC_017192:2153461:2174987217498721781573171Arcobacter sp. L, complete genometwo-component sensor kinase6e-25116
NC_010515:1678487:1707597170759717113103714Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencemulti-sensor hybrid histidine kinase6e-24113
NC_009439:4404942:4406940440694044106743735Pseudomonas mendocina ymp, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-23111
NC_010515:1618093:1645024164502416486083585Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePAS/PAC sensor hybrid histidine kinase2e-22108
NC_005773:866157:9120999120999138321734Pseudomonas syringae pv. phaseolicola 1448A, complete genomeresponse regulator/sensor histidine kinase, putative6e-22106
NC_009512:469000:4821324821324858753744Pseudomonas putida F1, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)8e-22106
NC_015733:443122:4535964535964573393744Pseudomonas putida S16 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase3e-21104
NC_008463:632869:6433476433476470843738Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein5e-21103
NC_018012:1274500:1293814129381412993365523Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein1e-1999
NC_016616:760145:7776457776457815653921Dechlorosoma suillum PS chromosome, complete genomePAS domain S-box8e-1996.3
NC_012796:1049034:1061214106121410631031890Desulfovibrio magneticus RS-1, complete genomeputative signaling protein2e-1894.7
NC_012796:1049034:1093541109354110954151875Desulfovibrio magneticus RS-1, complete genomeputative signaling protein4e-1894
NC_017192:1799000:1813625181362518168313207Arcobacter sp. L, complete genometwo-component sensor kinase6e-1893.2
NC_008570:1094442:1104414110441411078423429Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeresponse regulator/sensor histidine kinase1e-1792.4
NC_017192:276187:2761872761872785562370Arcobacter sp. L, complete genometwo-component sensor kinase2e-1791.3
NC_014762:2428721:2443461244346124460252565Sulfuricurvum kujiense DSM 16994 chromosome, complete genomediguanylate cyclase with pas/pac sensor4e-1790.9
NC_020064:3998715:4066858406685840691102253Serratia marcescens FGI94, complete genomesignal transduction histidine kinase8e-1789.7
NC_020829:3050817:3058078305807830598711794Pseudomonas denitrificans ATCC 13867, complete genomeputative two-component system sensor kinase7e-1686.3
NC_009663:851143:8714898714898737562268Sulfurovum sp. NBC37-1, complete genomesignal transduction response regulator3e-1584.3
NC_018012:1076839:1097004109700411013204317Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein7e-1583.2
NC_017098:840492:8552368552368573802145Spirochaeta africana DSM 8902 chromosome, complete genomePAS domain-containing protein4e-1377.4
NC_007626:3522265:3582241358224135836411401Magnetospirillum magneticum AMB-1, complete genomeResponse regulator containing a CheY-like receiver domain and a GGDEF domain4e-1377.4
NC_014166:2149984:2171101217110121744753375Arcobacter nitrofigilis DSM 7299 chromosome, complete genomePAS/PAC sensor-containg diguanylate cyclase7e-1273.2
NC_012796:4075583:4143009414300941475594551Desulfovibrio magneticus RS-1, complete genomeputative chemotaxis CheB/CheR fusion protein1e-1172.4
NC_017192:1745114:1767625176762517705822958Arcobacter sp. L, complete genometwo-component sensor kinase1e-1172.4
NC_015061:4286000:4309973430997343123122340Rahnella sp. Y9602 chromosome, complete genomemulti-sensor hybrid histidine kinase8e-1066.2
NC_013173:1609123:1609123160912316123623240Desulfomicrobium baculatum DSM 4028, complete genomePAS/PAC sensor hybrid histidine kinase1e-0965.9
NC_008576:777949:7779497779497811433195Magnetococcus sp. MC-1, complete genomemulti-sensor hybrid histidine kinase1e-0965.9
NC_007973:2348481:2351526235152623539732448Ralstonia metallidurans CH34 chromosome 1, complete sequenceperiplasmic sensor hybrid histidine kinase1e-0965.5
NC_009850:1011293:1026680102668010282541575Arcobacter butzleri RM4018, complete genometwo-component sensor histidine kinase2e-0965.1
NC_014624:551510:5515105515105544282919Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-0963.9
NC_013173:815696:8200458200458226542610Desulfomicrobium baculatum DSM 4028, complete genomePAS/PAC sensor hybrid histidine kinase5e-0963.5
NC_014394:2765261:2767287276728727709883702Gallionella capsiferriformans ES-2 chromosome, complete genomemulti-sensor hybrid histidine kinase7e-0963.2
NC_014933:1759729:1771478177147817730521575Bacteroides helcogenes P 36-108 chromosome, complete genomehistidine kinase1e-0862.4
NC_012880:3645304:3661255366125536653794125Dickeya dadantii Ech703, complete genomemulti-sensor hybrid histidine kinase1e-0862.4
NC_016629:3929716:3946579394657939493982820Desulfovibrio africanus str. Walvis Bay chromosome, completemulti-sensor hybrid histidine kinase2e-0862
NC_011769:2248902:2272085227208522756603576Desulfovibrio vulgaris str. 'Miyazaki F', complete genomemulti-sensor hybrid histidine kinase2e-0861.6
NC_007955:1254051:1254051125405112555741524Methanococcoides burtonii DSM 6242, complete genomemultisensor signal transduction histidine kinase2e-0861.6
NC_010162:9502480:9523351952335195254952145Sorangium cellulosum 'So ce 56', complete genometwo-component hybrid sensor and regulator3e-0861.2
NC_009615:3993187:4012092401209240152173126Parabacteroides distasonis ATCC 8503 chromosome, complete genometwo-component hybrid sensor kinase/response regulator7e-0859.7
NC_014623:8763551:8763551876355187656022052Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein8e-0859.7
NC_015416:1872000:1893695189369518961212427Methanosaeta concilii GP-6 chromosome, complete genometwo-component hybrid sensor and regulator1e-0759.3
NC_008313:886248:9048179048179065261710Ralstonia eutropha H16 chromosome 1, complete sequencesignal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain1e-0758.9
NC_014958:1335650:134834013483401349095756Deinococcus maricopensis DSM 21211 chromosome, complete genomeABC transporter periplasmic subunit1e-0758.9
NC_020291:2701149:2708618270861827102461629Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePAS domain S-box2e-0758.9
NC_008577:2402165:2402165240216524055243360Shewanella sp. ANA-3 chromosome 1, complete sequenceputative PAS/PAC sensor protein2e-0758.5
NC_008576:3331825:3347310334731033503032994Magnetococcus sp. MC-1, complete genomemulti-sensor hybrid histidine kinase2e-0758.5
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase2e-0758.5
NC_013173:1259898:1262227126222712656583432Desulfomicrobium baculatum DSM 4028, complete genomePAS/PAC sensor hybrid histidine kinase2e-0758.2
NC_019745:2346970:2362351236235123671774827Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase3e-0758.2
NC_007005:2191500:2211083221108322134222340Pseudomonas syringae pv. syringae B728a, complete genomePAS3e-0757.8
NC_006510:1501487:1507633150763315092611629Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-0757.8
NC_005773:866157:9016889016889039762289Pseudomonas syringae pv. phaseolicola 1448A, complete genomeresponse regulator/sensor histidine kinase3e-0757.8
NC_012796:3374911:3390327339032733932932967Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator5e-0757
NC_019745:2346970:2351713235171323570075295Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase5e-0757
NC_019757:4293000:4295335429533542975122178Cylindrospermum stagnale PCC 7417, complete genomePAS/PAC sensor hybrid histidine kinase5e-0757
NC_009614:3476000:3487839348783934909763138Bacteroides vulgatus ATCC 8482 chromosome, complete genometwo-component hybrid sensor kinase/response regulator6e-0756.6
NC_006347:3843228:3865068386506838669481881Bacteroides fragilis YCH46, complete genomehypothetical protein6e-0756.6
NC_012660:1737423:1756586175658617594082823Pseudomonas fluorescens SBW25 chromosome, complete genomeputative two-component system sensor kinase6e-0756.6
NC_012559:978419:9795639795639831803618Laribacter hongkongensis HLHK9, complete genomeSensor protein7e-0756.6
NC_015410:1324313:1340965134096513438802916Pseudomonas mendocina NK-01 chromosome, complete genomemulti-sensor hybrid histidine kinase9e-0756.2
NC_012796:4693500:4714436471443647185634128Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator1e-0655.8
NC_016609:7659853:7676835767683576798883054Niastella koreensis GR20-10 chromosome, complete genomemulti-sensor hybrid histidine kinase1e-0655.8
NC_020064:1611820:163286516328651633599735Serratia marcescens FGI94, complete genomeL-arginine-binding protein1e-0655.8
NC_015276:1426000:1434519143451914362521734Marinomonas mediterranea MMB-1 chromosome, complete genomehistidine kinase2e-0655.5
NC_007492:3462929:3475040347504034778502811Pseudomonas fluorescens PfO-1, complete genomePeriplasmic Sensor Hybrid Histidine Kinase2e-0655.5
NC_015578:3410367:3410367341036734133062940Treponema primitia ZAS-2 chromosome, complete genomemulti-sensor hybrid histidine kinase1e-0655.5
NC_015572:3723498:3729534372953437314681935Methylomonas methanica MC09 chromosome, complete genomehistidine kinase1e-0655.5
NC_007622:2399347:242361524236152424394780Staphylococcus aureus RF122, complete genomeextracellular amino acid binding ABC transporter2e-0655.1
NC_016776:844641:8616488616488628171170Bacteroides fragilis 638R, complete genomeputative histidine kinase2e-0655.1
NC_003228:793846:8108538108538120221170Bacteroides fragilis NCTC 9343, complete genomeputative histidine kinase2e-0655.1
NC_015428:823420:8399038399038420502148Lactobacillus buchneri NRRL B-30929 chromosome, complete genomepolar amino acid ABC transporter inner membrane subunit3e-0654.7
NC_006351:142788:1473091473091503533045Burkholderia pseudomallei K96243 chromosome 2, complete sequencehistidine kinase/response regulator fusion protein3e-0654.7
NC_013501:1140390:1161733116173311648223090Rhodothermus marinus DSM 4252, complete genomemulti-sensor signal transduction histidine kinase3e-0654.7
NC_013526:316075:3363983363983404894092Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomePAS/PAC sensor hybrid histidine kinase3e-0654.7
NC_007929:67810:7094670946724031458Lactobacillus salivarius subsp. salivarius UCC118, complete genomeGlutamine-binding protein / Glutamine transport system permease protein3e-0654.7
NC_007435:1981164:1985685198568519886512967Burkholderia pseudomallei 1710b chromosome II, complete sequencetwo-component system sensor protein3e-0654.7
NC_004663:2509433:2539054253905425412162163Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system sensor histidine kinase3e-0654.7
NC_007643:2722265:2748141274814127528234683Rhodospirillum rubrum ATCC 11170, complete genomeMulti-sensor Hybrid Histidine Kinase2e-0654.7
NC_012660:3179980:3203836320383632061512316Pseudomonas fluorescens SBW25 chromosome, complete genomeputative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA4e-0654.3
NC_014965:2200974:2223379222337922255292151Vibrio vulnificus MO6-24/O chromosome I, complete sequencesignal transduction histidine kinase3e-0654.3
NC_010337:616304:6331356331356359572823Heliobacterium modesticaldum Ice1, complete genomesensor histidine kinase3e-0654.3
NC_009078:142794:1473151473151504133099Burkholderia pseudomallei 1106a chromosome II, complete sequenceresponse regulator/sensor histidine kinase3e-0654.3
NC_010511:1691753:1700054170005417029812928Methylobacterium sp. 4-46 chromosome, complete genomemulti-sensor hybrid histidine kinase4e-0653.9
NC_010505:2530476:2546509254650925485392031Methylobacterium radiotolerans JCM 2831, complete genomePAS/PAC sensor hybrid histidine kinase4e-0653.9
NC_008700:3692333:3711339371133937150493711Shewanella amazonensis SB2B, complete genomesensory box histidine kinase/response regulator7e-0653.1
NC_004463:2475428:2475428247542824779292502Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator7e-0653.1
NC_014623:5350116:5368481536848153706552175Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein9e-0652.8
NC_013446:2237854:2263140226314022656652526Comamonas testosteroni CNB-2, complete genomemulti-sensor signal transduction histidine kinase1e-0552.8