Pre_GI: BLASTP Hits

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Query: NC_004578:2185907:2186515 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2186515, End: 2187957, Length: 1443

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:4062311:4077945407794540793871443Pseudomonas syringae pv. syringae B728a, complete genomeCytochrome c oxidase cbb3-type, subunit I0905
NC_005773:3851433:3866057386605738674991443Pseudomonas syringae pv. phaseolicola 1448A, complete genomecytochrome c oxidase, cbb3-type, subunit I0904
NC_007492:2035761:2035761203576120372031443Pseudomonas fluorescens PfO-1, complete genomeCytochrome c oxidase cbb3-type, subunit I0854
NC_012560:1965251:1987420198742019888621443Azotobacter vinelandii DJ, complete genomecytochrome c oxidase, cbb3-type, subunit I0813
NC_021150:1965264:1987433198743319888751443Azotobacter vinelandii CA6, complete genomecbb3-type cytochrome c oxidase subunit I0813
NC_007492:2035761:2039457203945720408811425Pseudomonas fluorescens PfO-1, complete genomeCytochrome c oxidase cbb3-type, subunit I0789
NC_014541:2122788:2135700213570021371301431Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit I0744
NC_009092:2282437:2297760229776022991871428Shewanella loihica PV-4, complete genomecytochrome c oxidase, cbb3-type, subunit I0729
NC_016901:2594942:2594942259494225963781437Shewanella baltica OS678 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit I0725
NC_009997:2635025:2635025263502526364611437Shewanella baltica OS195, complete genomecytochrome c oxidase, cbb3-type, subunit I0725
NC_009052:2512373:2547126254712625485621437Shewanella baltica OS155, complete genomecytochrome c oxidase, cbb3-type, subunit I0725
NC_016602:1994110:1994110199411019955371428Vibrio furnissii NCTC 11218 chromosome 1, complete sequencecytochrome c oxidase, Cbb3-type, subunit I0723
NC_008702:1432952:1460596146059614620201425Azoarcus sp. BH72, complete genomeprobable cytochrome c oxidase, cbb3-type,subunit I0714
NC_009379:435404:4459844459844474261443Polynucleobacter sp. QLW-P1DMWA-1, complete genomecytochrome c oxidase, cbb3-type, subunit I0699
NC_016745:2229271:2234039223403922353761338Oceanimonas sp. GK1 chromosome, complete genomecbb3-type cytochrome c oxidase subunit I0694
NC_014910:3458475:3472486347248634739251440Alicycliphilus denitrificans BC chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i0687
NC_015422:1163752:1170428117042811718671440Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit I0687
NC_011992:1038985:1042150104215010435891440Acidovorax ebreus TPSY, complete genomecytochrome c oxidase, cbb3-type, subunit I0674
NC_008782:1136732:1139894113989411413331440Acidovorax sp. JS42, complete genomecytochrome c oxidase, cbb3-type, subunit I0674
NC_007298:778723:7835877835877850141428Dechloromonas aromatica RCB, complete genomeCytochrome c oxidase cbb3-type, subunit I0672
NC_013422:2004478:2015536201553620169961461Halothiobacillus neapolitanus c2, complete genomecytochrome c oxidase, cbb3-type, subunit I1e-168593
NC_012848:320883:3426373426373442591623Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,cytochrome c oxidase, cbb3-type, subunit I5e-166584
NC_008095:6877388:6889429688942968918102382Myxococcus xanthus DK 1622, complete genomecytochrome c oxidase, cbb3-type, subunit I/II6e-159560
NC_020126:7896447:7918373791837379207332361Myxococcus stipitatus DSM 14675, complete genomebifunctional cbb3-type cytochrome c oxidase subunit I/II9e-158556
NC_009465:29735:3979839798412161419Candidatus Vesicomyosocius okutanii HA, complete genomecbb3-type cytochrome c oxidase subunit I5e-156551
NC_014934:2223822:2223822222382222260202199Cellulophaga algicola DSM 14237 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i1e-155550
NC_010118:133256:1469581469581491682211Candidatus Sulcia muelleri GWSS, complete genomebifunctional cytochrome c oxidase subunits ccoN/O1e-121436
NC_014166:3072703:3080775308077530822411467Arcobacter nitrofigilis DSM 7299 chromosome, complete genomecbb3-type cytochrome c oxidase subunit I4e-119428
NC_009714:1329573:1332880133288013343461467Campylobacter hominis ATCC BAA-381, complete genomecbb3-type cytochrome c oxidase subunit I4e-114412
NC_011146:1429836:1432591143259114339941404Geobacter bemidjiensis Bem, complete genomecytochrome c oxidase subunit I8e-113407
NC_020541:1827689:1845788184578818474041617Rhodanobacter sp. 2APBS1, complete genomeCbb3-type cytochrome oxidase, subunit 18e-54211
NC_015458:1938860:1939570193957019412191650Pusillimonas sp. T7-7 chromosome, complete genomecytochrome C oxidase subunit transmembrane protein1e-50201
NC_006513:1695487:1716225171622517178531629Azoarcus sp. EbN1, complete genomecytochrome C oxidase subunit transmembrane protein4e-50199
NC_012856:2266187:2266187226618722678391653Ralstonia pickettii 12D chromosome 1, complete genomeCytochrome-c oxidase9e-50198
NC_012440:373863:3738633738633752541392Persephonella marina EX-H1, complete genomeputative cytochrome c oxidase, subunit I6e-35149
NC_012660:2045398:2066634206663420680311398Pseudomonas fluorescens SBW25 chromosome, complete genomeputative cytochrome C subunit protein2e-34147
NC_010547:31444:5220552205539291725Cyanothece sp. ATCC 51142 chromosome linear, complete sequencecytochrome c oxidase subunit I3e-1067
NC_008312:409830:4282934282934299811689Trichodesmium erythraeum IMS101, complete genomeCytochrome-c oxidase5e-0962.8
NC_013730:6901725:6910170691017069120531884Spirosoma linguale DSM 74, complete genomeCytochrome-c oxidase9e-0962
NC_011884:1029328:1047387104738710491501764Cyanothece sp. PCC 7425, complete genomecytochrome c oxidase, subunit I6e-0859.3
NC_005125:760721:7916257916257932891665Gloeobacter violaceus PCC 7421, complete genomecytochrome c oxidase subunit I4e-0756.6
NC_015914:2658845:2668167266816726700591893Cyclobacterium marinum DSM 745 chromosome, complete genomecytochrome c oxidase subunit I5e-0756.2
NC_014655:2366201:2390772239077223926341863Leadbetterella byssophila DSM 17132 chromosome, complete genomecytochrome c oxidase subunit i5e-0756.2
NC_013959:1059004:1104867110486711062431377Sideroxydans lithotrophicus ES-1 chromosome, complete genomeNitric-oxide reductase7e-0755.8
NC_020054:1335699:1345346134534613472321887Fibrella aestuarina BUZ 2 drat genomeCytochrome-c oxidase4e-0653.1