Pre_GI: BLASTP Hits

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Query: NC_004578:212468:240728 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 240728, End: 242065, Length: 1338

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4549563:4555244455524445565811338Pseudomonas poae RE*1-1-14, complete genomeammonium transporter0753
NC_016830:6589575:6595264659526465965621299Pseudomonas fluorescens F113 chromosome, complete genomeprotein AmtB0731
NC_002947:5961096:5966352596635259676831332Pseudomonas putida KT2440, complete genomeammonium transporter0697
NC_018080:6048516:6050926605092660522541329Pseudomonas aeruginosa DK2 chromosome, complete genomeammonium transporter AmtB0659
NC_009656:6224221:6224221622422162255491329Pseudomonas aeruginosa PA7 chromosome, complete genomeammonium transporter0658
NC_007510:3340008:3341542334154233430561515Burkholderia sp. 383 chromosome 1, complete sequenceAmmonium transporter1e-121436
NC_010622:249625:3002553002553017601506Burkholderia phymatum STM815 chromosome 1, complete sequenceammonium transporter5e-120431
NC_013854:330543:3502453502453516871443Azospirillum sp. B510, complete genomeammonium transporter8e-111400
NC_011420:2803196:2822091282209128234311341Rhodospirillum centenum SW, complete genomeammonia transporter4e-108392
NC_012856:207194:2314892314892330631575Ralstonia pickettii 12D chromosome 1, complete genomeammonium transporter9e-108390
NC_016616:760145:7643797643797657791401Dechlorosoma suillum PS chromosome, complete genomeammonium transporter3e-107389
NC_015138:322386:3267723267723282081437Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeammonium transporter3e-106385
NC_008752:261903:2625102625102637301221Acidovorax avenae subsp. citrulli AAC00-1, complete genome8e-106384
NC_014972:2328228:2355197235519723565971401Desulfobulbus propionicus DSM 2032 chromosome, complete genomeammonium transporter7e-104377
NC_015563:334942:3509333509333522851353Delftia sp. Cs1-4 chromosome, complete genomeammonium transporter9e-104377
NC_014034:3570034:3589181358918135905421362Rhodobacter capsulatus SB1003 chromosome, complete genomeammonium transporter4e-103375
NC_009484:429269:4292694292694305701302Acidiphilium cryptum JF-5 chromosome, complete genomeammonium transporter4e-103375
NC_013209:1969734:1980939198093919823901452Acetobacter pasteurianus IFO 3283-01, complete genometransporter of Ammonium AmtB8e-103374
NC_017100:1972389:1983594198359419850451452Acetobacter pasteurianus IFO 3283-03, complete genometransporter of Ammonium AmtB8e-103374
NC_017108:1969716:1980921198092119823721452Acetobacter pasteurianus IFO 3283-12, complete genometransporter of Ammonium AmtB8e-103374
NC_017111:1969704:1980909198090919823601452Acetobacter pasteurianus IFO 3283-32, complete genometransporter of Ammonium AmtB8e-103374
NC_017121:1969716:1980921198092119823721452Acetobacter pasteurianus IFO 3283-07, complete genometransporter of Ammonium AmtB8e-103374
NC_017125:1972384:1983589198358919850401452Acetobacter pasteurianus IFO 3283-22, complete genometransporter of Ammonium AmtB8e-103374
NC_017146:1972396:1983601198360119850521452Acetobacter pasteurianus IFO 3283-26, complete genometransporter of Ammonium AmtB8e-103374
NC_017150:1877480:1888685188868518901361452Acetobacter pasteurianus IFO 3283-01-42C, complete genometransporter of Ammonium AmtB8e-103374
NC_010524:4402478:4418402441840244199161515Leptothrix cholodnii SP-6, complete genomeammonium transporter5e-102371
NC_011586:268927:3283683283683297651398Acinetobacter baumannii AB0057 chromosome, complete genomeammonium transporter8e-102371
NC_010611:240839:2661082661082675051398Acinetobacter baumannii ACICU, complete genomeAmmonia permease9e-102370
NC_017162:270460:2935692935692949661398Acinetobacter baumannii 1656-2 chromosome, complete genomeAmmonium transport protein9e-102370
NC_017171:280762:2959622959622973591398Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeammonium transporter9e-102370
NC_011296:1636242:1636595163659516379381344Thermodesulfovibrio yellowstonii DSM 11347, complete genomeammonium transporter3e-101369
NC_010410:3606826:3606826360682636082231398Acinetobacter baumannii AYE, complete genomeammonium transport protein (Amt family)4e-101369
NC_016027:1647110:1647511164751116488901380Gluconacetobacter xylinus NBRC 3288, complete genomeammonium transporter2e-100366
NC_015164:2859000:2892299289229928936631365Bacteroides salanitronis DSM 18170 chromosome, complete genomeammonium transporter2e-100366
NC_008786:3681847:3696475369647536980131539Verminephrobacter eiseniae EF01-2, complete genomeammonium transporter2e-97356
NC_007644:161222:1883131883131897161404Moorella thermoacetica ATCC 39073, complete genomeammonium transporter2e-96352
NC_013385:1882549:1890155189015518914591305Ammonifex degensii KC4, complete genomeammonium transporter2e-91336
NC_015318:426707:4282164282164295111296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter7e-91334
NC_015567:1127780:1132001113200111332871287Serratia sp. AS9 chromosome, complete genomeammonium transporter2e-90333
NC_015566:1127595:1131816113181611331021287Serratia sp. AS12 chromosome, complete genomeammonium transporter2e-90333
NC_015681:1558873:1559435155943515606491215Thermodesulfatator indicus DSM 15286 chromosome, complete genomeammonium transporter6e-90331
NC_015656:132633:1354911354911367861296Frankia symbiont of Datisca glomerata chromosome, complete genomeammonium transporter4e-85315
NC_017068:2569609:2571523257152325728361314Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ammonium transporter NrgA2e-83310
NC_010162:3177324:3189588318958831908921305Sorangium cellulosum 'So ce 56', complete genomeammonium transporter4e-81302
NC_015318:426707:4267074267074280021296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter6e-81301
NC_014666:7838500:7839782783978278411251344Frankia sp. EuI1c chromosome, complete genomeammonium transporter8e-81301
NC_007681:770267:7742067742067754291224Methanosphaera stadtmanae DSM 3091, complete genomeammonium transporter6e-78291
NC_020291:6426704:6428110642811064293511242Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeammonium transporter NrgA2e-77290
NC_020304:1977249:1982799198279919840221224Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter1e-76287
NC_013939:1417750:1432456143245614337121257Deferribacter desulfuricans SSM1, complete genomeammonium transporter Amt family3e-76286
NC_003901:860242:8817148817148829131200Methanosarcina mazei Go1, complete genomeammonium transporter4e-76285
NC_020389:714178:7301137301137313061194Methanosarcina mazei Tuc01, complete genomeAmmonium transporter6e-76285
NC_018876:1061682:1061682106168210628781197Methanolobus psychrophilus R15 chromosome, complete genomeammonium transporter5e-73275
NC_013204:2955500:2955915295591529571891275Eggerthella lenta DSM 2243, complete genomeammonium transporter1e-68261
NC_006448:465656:4732124732124744951284Streptococcus thermophilus LMG 18311, complete genomeammonium uptake transporter6e-69261
NC_008532:469888:4774784774784787131236Streptococcus thermophilus LMD-9, complete genomeAmmonia permease1e-68260
NC_015277:2702056:2714897271489727162161320Sphingobacterium sp. 21 chromosome, complete genomeammonium transporter2e-67256
NC_015737:2050219:2066723206672320679641242Clostridium sp. SY8519, complete genomeammonia permease3e-67256
NC_012785:205502:2246632246632259041242Kosmotoga olearia TBF 19.5.1, complete genomeammonium transporter3e-67256
NC_014624:287500:2876222876222888271206Eubacterium limosum KIST612 chromosome, complete genomeputative ammonium transporter family1e-66253
NC_015975:789312:8103168103168116261311Lactobacillus ruminis ATCC 27782 chromosome, complete genomeAmmonium transporter2e-65250
NC_014334:589526:5920275920275933431317Lactobacillus casei str. Zhang chromosome, complete genomeammonia permease4e-62239
NC_015435:607345:6206456206456220151371Metallosphaera cuprina Ar-4 chromosome, complete genomeammonium transporter3e-38159
NC_009614:4918877:4929676492967649310341359Bacteroides vulgatus ATCC 8482 chromosome, complete genomeammonium transporter1e-32140
NC_014933:2525393:2533927253392725353481422Bacteroides helcogenes P 36-108 chromosome, complete genomeammonium transporter4e-32139
NC_014122:842560:8573058573058585461242Methanocaldococcus infernus ME chromosome, complete genomeammonium transporter4e-29129
NC_009925:6024888:6043838604383860485324695Acaryochloris marina MBIC11017, complete genometwo-component hybrid sensor and regulator histidine kinase7e-29128
NC_012781:629761:6467086467086484651758Eubacterium rectale ATCC 33656, complete genomeadenylate/guanylate cyclase1e-26121
NC_009932:39348:4156741567433811815Acaryochloris marina MBIC11017 plasmid pREB7, complete sequenceammonium transporter2e-26120
NC_016935:7512884:7530614753061475319031290Paenibacillus mucilaginosus 3016 chromosome, complete genomeammonium transporter6e-25115
NC_015690:7422911:7440643744064374419321290Paenibacillus mucilaginosus KNP414 chromosome, complete genomeammonium transporter6e-25115
NC_015500:484984:4849844849844867261743Treponema brennaborense DSM 12168 chromosome, complete genomeammonium transporter7e-24112
NC_013943:2361617:2378144237814423794751332Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeammonium transporter6e-24112
NC_013410:2253631:2253631225363122548961266Fibrobacter succinogenes subsp. succinogenes S85 chromosome,ammonium transporter1e-23111
NC_012779:1966205:197725519772551977824570Edwardsiella ictaluri 93-146, complete genomeammonium transporter1e-23111
NC_014323:625155:6364956364956377001206Herbaspirillum seropedicae SmR1 chromosome, complete genomeammonium transporter transmembrane protein1e-20100
NC_014931:4490526:4504459450445945056611203Variovorax paradoxus EPS chromosome, complete genomeammonium transporter3e-20100
NC_009483:2640403:2660307266030726615271221Geobacter uraniireducens Rf4 chromosome, complete genomeRh family protein/ammonium transporter8e-2098.6
NC_014532:110875:1138031138031150441242Halomonas elongata DSM 2581, complete genomeammonium transporter9e-1995.1
NC_007205:60069:6006960069622042136Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein2e-1894
NC_018691:4619245:4635167463516746364261260Alcanivorax dieselolei B5 chromosome, complete genomeRh-like protein/ammonium transporter1e-1791.7
NC_013959:1059004:1062736106273610639381203Sideroxydans lithotrophicus ES-1 chromosome, complete genomeammonium transporter1e-1791.3
NC_020304:256000:2563732563732577281356Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter2e-1790.5
NC_018868:2867500:2891195289119528924271233Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeammonium transporter9e-1788.6
NC_013517:599949:6150796150796163471269Sebaldella termitidis ATCC 33386, complete genomeammonium transporter1e-1688.2
NC_007645:6500059:6538405653840565396761272Hahella chejuensis KCTC 2396, complete genomeammonium transporter4e-1686.3
NC_008701:1310857:1326751132675113279921242Pyrobaculum islandicum DSM 4184, complete genomeRh family protein/ammonium transporter5e-1685.9
NC_021064:2001786:200451220045122005123612Propionibacterium avidum 44067, complete genomeammonium transporter7e-1582
NC_010322:1817598:1865309186530918665171209Pseudomonas putida GB-1 chromosome, complete genomeRh family protein/ammonium transporter3e-1480.1
NC_013156:573037:5744045744045755551152Methanocaldococcus fervens AG86, complete genomeammonium transporter1e-1377.8
NC_006513:2708213:2724179272417927253811203Azoarcus sp. EbN1, complete genomeputative ammonium transporter2e-1377.4
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein3e-1377
NC_007404:1776147:1792571179257117937731203Thiobacillus denitrificans ATCC 25259, complete genomeputative ammonium transporter6e-1169.3
NC_016616:1091606:1094955109495510961601206Dechlorosoma suillum PS chromosome, complete genomeammonia permease1e-0965.1
NC_014118:2417838:242445024244502424659210Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2e-0964.3