Pre_GI: BLASTP Hits

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Query: NC_004578:212468:239653 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 239653, End: 239934, Length: 282

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4549563:455737845573784557638261Pseudomonas poae RE*1-1-14, complete genomehypothetical protein7e-23105
NC_016830:6589575:659738665973866597646261Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein1e-21101
NC_018080:6048516:605307260530726053332261Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1788.6
NC_009656:6224221:622636862263686226628261Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-1787.8
NC_002947:5961096:596858759685875968853267Pseudomonas putida KT2440, complete genomehypothetical protein1e-1685.1