Pre_GI: BLASTP Hits

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Query: NC_004578:212468:239314 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 239314, End: 239619, Length: 306

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:952342:980443980443980748306Pseudomonas fluorescens F113 chromosome, complete genomevirulence-associated protein7e-33139
NC_013889:216829:231369231369231668300Thioalkalivibrio sp. K90mix chromosome, complete genomeplasmid maintenance system antidote protein, XRE family6e-26115
NC_007517:3344799:335968033596803359985306Geobacter metallireducens GS-15, complete genomeplasmid maintenance system antidote protein, XRE family1e-25115
NC_008740:3520500:354310635431063543420315Marinobacter aquaeolei VT8, complete genomeplasmid maintenance system antidote protein, XRE family9e-24108
NC_012969:2476318:250078525007852501090306Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeXRE family plasmid maintenance system antidote protein2e-23107
NC_017506:4380196:440068344006834400982300Marinobacter adhaerens HP15 chromosome, complete genomeplasmid maintenance system antidote protein8e-23105
NC_011901:39215:436174361743916300Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeXRE family transcriptional regulator1e-21102
NC_011666:2259447:228055822805582280839282Methylocella silvestris BL2, complete genomeplasmid maintenance system antidote protein, XRE family3e-21100
NC_002937:1764117:180123418012341801539306Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeDNA-binding protein1e-2098.2
NC_007626:697926:712501712501712788288Magnetospirillum magneticum AMB-1, complete genomePlasmid maintenance system antidote protein7e-2095.9
NC_016629:3789554:382642838264283826736309Desulfovibrio africanus str. Walvis Bay chromosome, completeplasmid maintenance system antidote protein1e-1995.1
NC_011769:2016000:204183120418312042136306Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeplasmid maintenance system antidote protein, XRE family9e-1992
NC_014761:2248000:224929522492952249597303Oceanithermus profundus DSM 14977 chromosome, complete genomeplasmid maintenance system antidote protein, xre family1e-1891.7
NC_009142:949510:953420953420953719300Saccharopolyspora erythraea NRRL 2338, complete genomeplasmid maintenance system antidote protein4e-1889.7
NC_016609:4233701:426360942636094263989381Niastella koreensis GR20-10 chromosome, complete genomeplasmid maintenance system antidote protein1e-1788.2
NC_014221:1518583:153149315314931531801309Truepera radiovictrix DSM 17093 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-1787.8
NC_013174:815155:828461828461828763303Jonesia denitrificans DSM 20603, complete genomeplasmid maintenance system antidote protein, XRE family3e-1787.4
NC_009937:958576:973552973552973860309Azorhizobium caulinodans ORS 571, complete genomehypothetical protein5e-1786.7
NC_004369:3027539:303409030340903034425336Corynebacterium efficiens YS-314, complete genomeputative virulence-associated protein2e-1684.3
NC_017271:4852351:487060048706004870890291Xanthomonas campestris pv. raphani 756C chromosome, completeHigA family addiction module antidote protein3e-1684
NC_015125:3284095:329968632996863299988303Microbacterium testaceum StLB037, complete genomeplasmid maintenance system antidote protein3e-1684
NC_015563:3511951:351478035147803515082303Delftia sp. Cs1-4 chromosome, complete genomeXRE family plasmid maintenance system antidote protein4e-1683.6
NC_008536:2961460:297454929745492974878330Solibacter usitatus Ellin6076, complete genomeplasmid maintenance system antidote protein, XRE family4e-1683.2
NC_003902:4989855:500635450063545006644291Xanthomonas campestris pv. campestris str. ATCC 33913, completevirulence associated protein1e-1582
NC_007086:5064053:507903950790395079329291Xanthomonas campestris pv. campestris str. 8004, complete genomevirulence associated protein1e-1582
NC_013861:728648:743379743379743672294Legionella longbeachae NSW150, complete genomeHypothetical Protein with Helix-turn-helix motif3e-1580.5
NC_008358:2808299:282618928261892826482294Hyphomonas neptunium ATCC 15444, complete genomeaddiction module antidote protein, HigA family3e-1580.5
NC_014643:609544:618849618849619109261Rothia dentocariosa ATCC 17931 chromosome, complete genomeHigA family addiction module antidote protein5e-1579.7
NC_011979:2969969:299132529913252991630306Geobacter sp. FRC-32, complete genomeplasmid maintenance system antidote protein, XRE family5e-1579.7
NC_012108:1067876:107674710767471077058312Desulfobacterium autotrophicum HRM2, complete genomeplasmid maintenance system antidote protein (HTH-type transcriptional regulator family protein)7e-1579.3
NC_010602:2244729:232945723294572329762306Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'putative plasmid maintenance system antidote-like protein9e-1579
NC_010842:2310756:233484423348442335149306Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeplasmid maintenance system antidote protein9e-1579
NC_014973:5099543:510360051036005103914315Geobacter sp. M18 chromosome, complete genomeXRE family plasmid maintenance system antidote protein1e-1478.6
NC_010995:4297361:431725843172584317575318Cellvibrio japonicus Ueda107, complete genomehelix-turn-helix domain protein1e-1478.6
NC_011757:1121262:113548011354801135839360Methylobacterium chloromethanicum CM4, complete genomeplasmid maintenance system antidote protein, XRE family2e-1477.4
NC_011060:2525367:253130225313022531688387Pelodictyon phaeoclathratiforme BU-1, complete genomeplasmid maintenance system antidote protein, XRE family3e-1477.4
NC_016026:1760856:176525417652541765556303Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeHigA family addiction module antidote protein4e-1477
NC_008751:1736512:175481817548181755120303Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeplasmid maintenance system antidote protein, XRE family6e-1476.3
NC_013174:815155:818269818269818622354Jonesia denitrificans DSM 20603, complete genomeplasmid maintenance system antidote protein, XRE family1e-1374.7
NC_012580:353273:356234356234356551318Vibrio cholerae M66-2 chromosome II, complete sequenceantidote protein1e-1375.1
NC_012580:353273:373272373272373589318Vibrio cholerae M66-2 chromosome II, complete sequenceantidote protein1e-1375.1
NC_012583:335000:353675353675353992318Vibrio cholerae O395 chromosome chromosome II, complete sequenceantidote protein, putative1e-1375.1
NC_012667:931390:991679991679991996318Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein1e-1375.1
NC_016446:49618:947919479195108318Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein1e-1375.1
NC_010617:774914:785481785481785807327Kocuria rhizophila DC2201, complete genomeXre family DNA-binding protein2e-1374.3
NC_008571:938835:101154410115441011843300Gramella forsetii KT0803, complete genomeplasmid maintenance system antidote protein3e-1373.9
NC_011060:2099255:212090821209082121228321Pelodictyon phaeoclathratiforme BU-1, complete genomeplasmid maintenance system antidote protein, XRE family3e-1373.9
NC_013889:1740858:175184017518401752157318Thioalkalivibrio sp. K90mix chromosome, complete genomeplasmid maintenance system antidote protein, XRE family7e-1372.4
NC_013173:2884887:293123329312332931562330Desulfomicrobium baculatum DSM 4028, complete genomeplasmid maintenance system antidote protein, XRE family9e-1372.4
NC_009720:251703:277612277612277920309Xanthobacter autotrophicus Py2, complete genomeXRE family plasmid maintenance system antidote protein1e-1271.6
NC_014562:1772842:179353317935331793910378Pantoea vagans C9-1 chromosome, complete genomeUncharacterized HTH-type transcriptional regulator ybaQ1e-1271.6
NC_011901:2914000:292741029274102927730321Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeXRE family transcriptional regulator2e-1270.9
NC_020156:3670500:367855636785563678858303Nonlabens dokdonensis DSW-6, complete genomeplasmid maintenance system antidote protein2e-1270.9
NC_010842:2310756:231780323178032318144342Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeplasmid maintenance system antidote protein3e-1270.5
NC_010602:2244729:231241723124172312758342Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'putative lambda repressor-like DNA-binding protein3e-1270.5
NC_009483:4434375:446194244619424462226285Geobacter uraniireducens Rf4 chromosome, complete genomeXRE family plasmid maintenance system antidote protein4e-1270.1
NC_015673:1794590:181670918167091817008300Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein4e-1270.1
NC_015694:48344:614961496463315Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequenceplasmid maintenance system antidote protein, XRE family5e-1270.1
NC_011146:2200142:220804622080462208348303Geobacter bemidjiensis Bem, complete genomeplasmid maintenance system antidote protein, XRE family5e-1269.7
NC_014973:243000:250913250913251218306Geobacter sp. M18 chromosome, complete genomeXRE family plasmid maintenance system antidote protein5e-1269.7
NC_007643:3799425:381628338162833816618336Rhodospirillum rubrum ATCC 11170, complete genomePlasmid maintenance system antidote protein6e-1269.7
NC_009943:1637582:164721016472101647521312Candidatus Desulfococcus oleovorans Hxd3, complete genomeplasmid maintenance system antidote protein, XRE family1e-1168.2
NC_014972:210500:219991219991220326336Desulfobulbus propionicus DSM 2032 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family3e-1167
NC_015386:125499:127514127514127810297Treponema succinifaciens DSM 2489 plasmid pTRESU01, completeplasmid maintenance system antidote protein, XRE family2e-1064.7
NC_008529:1663000:166534116653411665664324Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePlasmid maintenance system antidote protein4e-1063.5
NC_012962:1827000:184365418436541843959306Photorhabdus asymbiotica, complete genomehypothetical protein7e-1062.8
NC_012108:4937000:494591549459154946178264Desulfobacterium autotrophicum HRM2, complete genomeputative plasmid maintenance system antidote protein1e-0962
NC_014394:1594071:160194316019431602245303Gallionella capsiferriformans ES-2 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-0961.2
NC_019940:203718:210322210322210603282Thioflavicoccus mobilis 8321 chromosome, complete genomeHigA family addiction module antidote protein4e-0960.1
NC_017505:1013311:101984310198431020154312Neisseria meningitidis alpha710 chromosome, complete genomeHTH-type transcriptional regulator5e-0959.7
NC_011035:933269:948316948316948627312Neisseria gonorrhoeae NCCP11945 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family5e-0959.7
NC_017511:852260:864713864713865024312Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family5e-0959.7
NC_014032:825793:925578925578925895318Salinibacter ruber M8 chromosome, complete genomePlasmid maintenance system antidote protein1e-0858.9
NC_007677:771168:828581828581828898318Salinibacter ruber DSM 13855, complete genomeaddiction module antidote protein, HigA family1e-0858.9
NC_014033:1564733:157464715746471574946300Prevotella ruminicola 23 chromosome, complete genomeputative addiction module antidote protein, HigA family2e-0857.4
NC_020302:1074120:108242810824281082682255Corynebacterium halotolerans YIM 70093 = DSM 44683, completeplasmid maintenance system antidote- like protein3e-0857
NC_008054:1649160:164976716497671650003237Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete3e-0857
NC_005126:3485330:350492235049223505212291Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-0856.6
NC_014722:1467996:147187714718771472230354Burkholderia rhizoxinica HKI 454, complete genomevirulence-associated protein A8e-0855.8
NC_007508:5093365:511545851154585115748291Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative DNA-binding protein9e-0855.8
NC_015160:63500:739707397074287318Odoribacter splanchnicus DSM 20712 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-0754.3
NC_015385:965341:9872289872289883341107Treponema succinifaciens DSM 2489 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-0754.3
NC_016745:2028424:205189620518962052180285Oceanimonas sp. GK1 chromosome, complete genomeXRE family transcriptional regulator2e-0754.3
NC_019940:2098902:210830321083032108551249Thioflavicoccus mobilis 8321 chromosome, complete genomeHigA family addiction module antidote protein2e-0754.3
NC_014722:846084:8924778924778936491173Burkholderia rhizoxinica HKI 454, complete genomevirulence-associated protein I4e-0753.5
NC_004567:343500:383455383455383748294Lactobacillus plantarum WCFS1, complete genomeplantaricin biosynthesis protein PlnY (putative)6e-0752.8
NC_011138:3881446:3901794390179439029091116Alteromonas macleodii 'Deep ecotype', complete genomePlasmid maintenance system antidote protein8e-0752.4
NC_015519:270637:2830682830682841591092Tepidanaerobacter sp. Re1 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family1e-0652
NC_010682:3313944:3320844332084433219741131Ralstonia pickettii 12J chromosome 1, complete sequenceplasmid maintenance system antidote protein, XRE family1e-0652
NC_006350:3865584:387682638768263877173348Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein2e-0651.2
NC_009937:3748885:375806937580693758392324Azorhizobium caulinodans ORS 571, complete genomeplasmid maintenance system antidote protein2e-0651.2
NC_011000:183928:197138197138197497360Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein3e-0650.4
NC_013889:1159343:117651211765121176784273Thioalkalivibrio sp. K90mix chromosome, complete genomeplasmid maintenance system antidote protein, XRE family4e-0650.1
NC_011750:1809943:182922218292221829506285Escherichia coli IAI39 chromosome, complete genome4e-0650.4
NC_007384:1737885:173898517389851739347363Shigella sonnei Ss046, complete genomehypothetical protein4e-0650.4
NC_021150:4201965:423203442320344232321288Azotobacter vinelandii CA6, complete genomeantitoxin protein4e-0650.4
NC_004337:1783645:178472317847231785085363Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-0650.4
NC_012560:4201969:423203842320384232325288Azotobacter vinelandii DJ, complete genomeantitoxin protein4e-0650.4
NC_017328:1835108:183804318380431838405363Shigella flexneri 2002017 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family4e-0650.4
NC_009800:2651730:2653015265301526571124098Escherichia coli HS, complete genomeputative addiction module5e-0649.7
NC_015410:3209954:321563332156333215920288Pseudomonas mendocina NK-01 chromosome, complete genomeantitoxin protein6e-0649.7