Pre_GI: BLASTP Hits

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Query: NC_004578:212468:219429 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 219429, End: 219506, Length: 78

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:1190000:121282012128201213179360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:212468:221125221125221484360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:895019:911777911777912136360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:3597083:360907236090723609431360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:20738:467544675447113360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4061372:407123740712374071596360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4499143:451061545106154510974360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4499143:451144745114474511806360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4940000:495542549554254955784360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:20738:565425654256901360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:5336773:536733253673325367691360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4781326:479234947923494792708360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:3597083:361641336164133616772360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:5916711:593441959344195934778360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:5916711:593610059361005936459360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:5336773:540413654041365404495360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:6138669:614699261469926147351360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:6089958:610151361015136101872360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:2671508:268914626891462689505360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf16e-0856.2
NC_004578:4465247:447454344745434474902360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf11e-0755.5
NC_010322:583842:595525595525595884360Pseudomonas putida GB-1 chromosome, complete genomeIS66 Orf2 family protein2e-0754.7
NC_010322:5349000:536226353622635362622360Pseudomonas putida GB-1 chromosome, complete genomeIS66 Orf2 family protein2e-0754.7
NC_002947:4604582:462751846275184627877360Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf12e-0754.7
NC_015733:1179977:118873511887351189094360Pseudomonas putida S16 chromosome, complete genomeISPpu15, transposase Orf12e-0754.7
NC_015733:1555476:158428215842821584641360Pseudomonas putida S16 chromosome, complete genomeISPpu15, transposase Orf12e-0754.7
NC_002947:5386489:540334154033415403700360Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf12e-0754.7
NC_002947:737924:746515746515746871357Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf12e-0754.7
NC_004578:6089958:610512461051246105483360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf12e-0754.3
NC_016830:1182765:119408111940811194440360Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein3e-0753.9
NC_016830:6589575:660267266026726603031360Pseudomonas fluorescens F113 chromosome, complete genomeISPsy5, Orf13e-0753.9
NC_004578:3241618:324801532480153248374360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf14e-0753.5
NC_002947:4484824:449525844952584495614357Pseudomonas putida KT2440, complete genomeISPpu13, transposase Orf15e-0753.1
NC_009439:3394174:341041034104103410769360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2
NC_009439:442890:462006462006462365360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2
NC_009439:442890:459333459333459692360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2
NC_009439:1174432:118723911872391187598360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2
NC_009439:1297851:131142713114271311786360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2
NC_009439:20545:350523505235411360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein2e-0651.2