Pre_GI: BLASTP Hits

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Query: NC_004578:212468:214448 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 214448, End: 214963, Length: 516

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014323:992978:102089110208911021841951Herbaspirillum seropedicae SmR1 chromosome, complete genomequinohemoprotein alcohol dehydrogenase6e-35146
NC_015422:4508028:451176145117614512651891Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein3e-32137
NC_014323:992978:101865510186551019566912Herbaspirillum seropedicae SmR1 chromosome, complete genomequinohemoprotein alcohol dehydrogenase5e-32136
NC_009717:271385:278943278943279914972Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequenceputative signal peptide2e-22105
NC_011000:2831183:284608728460872846962876Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative alcohol dehydrogenase3e-1581.3
NC_014153:1663597:168557616855761686562987Thiomonas intermedia K12 chromosome, complete genomeProtein involved in meta-pathway of phenol degradation-like protein4e-0753.9