Pre_GI: BLASTP Hits

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Query: NC_004578:212468:212468 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 212468, End: 213511, Length: 1044

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014931:3642779:3645846364584636468801035Variovorax paradoxus EPS chromosome, complete genomeAliphatic nitrilase1e-113410
NC_011000:2831183:2843804284380428448531050Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative nitrilase4e-107388
NC_007802:3807500:3818178381817838192031026Jannaschia sp. CCS1, complete genomeNitrilase1e-91336
NC_009511:4582188:4596845459684545979061062Sphingomonas wittichii RW1 chromosome, complete genomenitrilase7e-68257
NC_013159:2098500:209851620985162099511996Saccharomonospora viridis DSM 43017, complete genomepredicted amidohydrolase1e-61237
NC_006625:144929:1529221529221539231002Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencecarbon-nitrogen hydrolase4e-41169
NC_011758:369704:7191719182671077Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase5e-41168
NC_014841:41773:5817858178591791002Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-38159
NC_015660:1988000:200978320097832010748966Geobacillus thermoglucosidasius C56-YS93 chromosome, completeNitrilase2e-37156
NC_010681:1202929:122609812260981226526429Burkholderia phytofirmans PsJN chromosome 1, complete sequence3e-36152
NC_014307:1855356:1882034188203418830501017Ralstonia solanacearum CFBP2957 chromosome, complete genomenitrilase2e-34147
NC_004129:3965947:397546839754683976445978Pseudomonas fluorescens Pf-5, complete genomehydrolase, carbon-nitrogen family3e-34146
NC_008596:4196194:421735142173514218319969Mycobacterium smegmatis str. MC2 155, complete genomealiphatic nitrilase5e-34145
NC_015684:1343251:1360478136047813615421065Oligotropha carboxidovorans OM5 chromosome, complete genomenitrilase1e-30134
NC_011386:2762886:2762886276288627639501065Oligotropha carboxidovorans OM5, complete genomealiphatic nitrilase1e-30134
NC_013524:314814:3346423346423357331092Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase1e-28127
NC_014839:12519:342173421735164948Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-26120
NC_012724:147454:163290163290164213924Burkholderia glumae BGR1 chromosome 1, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase4e-25115
NC_013740:1081454:108746410874641088387924Acidaminococcus fermentans DSM 20731, complete genomeNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase3e-24112
NC_012988:4292815:431601443160144316916903Methylobacterium extorquens DM4, complete genomeN-carbamyl-D-amino acid amidohydrolase1e-0757.8
NC_010501:1286971:130410713041071305003897Pseudomonas putida W619, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-0653.9