Pre_GI: BLASTN Hits

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Query: NC_004556:1611973 Xylella fastidiosa Temecula1, complete genome

Start: 1611973, End: 1631114, Length: 19142

Host Lineage: Xylella fastidiosa; Xylella; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1998 from a naturally infected Californian, USA grapevine. This organism was first identified in 1993 as the causal agent of citrus variegated chlorosis, a disease that affects varieties of sweet oranges. Other strains of this species cause a range of diseases in mulberry, pear, almond, elm, sycamore, oak, maple, pecan and coffee which collectively result in multimillion dollar devastation of economically important plants. It does not contain a type III secretion system, but possesses genes for a type II secretion system for export of exoenzymes that degrade the plant cell wall and allow the bacterium to colonize the plant xylem. The cell produces an exopolysaccharide that is similar to the xanthan gum produced by Xanthomonas campestris pv. campestris.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002488:22358832235883226042224540Xylella fastidiosa 9a5c, complete genome023540BLASTN svgBLASTP svg
NC_007086:1988000*1988000201548327484Xanthomonas campestris pv. campestris str. 8004, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003902:2903493*2903493292609922607Xanthomonas campestris pv. campestris str. ATCC 33913, complete1e-1489.7BLASTN svgBLASTP svg
NC_019940:2931500*2931500296263931140Thioflavicoccus mobilis 8321 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_014394:52200052200054414222143Gallionella capsiferriformans ES-2 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_018643:1*11850918509Alpha proteobacterium HIMB5 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009850:1011293*1011293103921027918Arcobacter butzleri RM4018, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome9e-0660BLASTN svgBLASTP svg