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Query: NC_004547:611178 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 611178, End: 634493, Length: 23316

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013421:70100570100575174450740Pectobacterium wasabiae WPP163, complete genome01015BLASTN svgBLASTP svg
NC_015566:31634031634033998123642Serratia sp. AS12 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_009832:45215854521585455112429540Serratia proteamaculans 568, complete genome5e-23117BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012880:3529017*3529017356582436808Dickeya dadantii Ech703, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_020181:33288443328844335909930256Enterobacter aerogenes EA1509E, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014532:35555503555550358012324574Halomonas elongata DSM 2581, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015567:31303531303533628323249Serratia sp. AS9 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009832:35829135829138209923809Serratia proteamaculans 568, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007005:16368751636875167981442940Pseudomonas syringae pv. syringae B728a, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010170:1498253*1498253154638148129Bordetella petrii, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome3e-0661.9BLASTN svgBLASTP svg