Pre_GI: BLASTN Hits

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Query: NC_004547:1683593 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1683593, End: 1727303, Length: 43711

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007651:2639553*2639553269172452172Burkholderia thailandensis E264 chromosome I, complete sequence1e-34157BLASTN svgBLASTP svg
NC_014228:1929665*1929665198074651082Xenorhabdus nematophila ATCC 19061, complete genome6e-18101BLASTN svgBLASTP svg
NC_014500:1862000*1862000191726855269Dickeya dadantii 3937 chromosome, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_020126:6903465*6903465693000326539Myxococcus stipitatus DSM 14675, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_020126:3383902*3383902342138737486Myxococcus stipitatus DSM 14675, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_020126:4517133*4517133455758540453Myxococcus stipitatus DSM 14675, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete4e-1385.7BLASTN svgBLASTP svg
NC_015711:6522808*6522808656473541928Myxococcus fulvus HW-1 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_007005:44113884411388444643035043Pseudomonas syringae pv. syringae B728a, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_013440:39770973977097405558678490Haliangium ochraceum DSM 14365, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_010125:2884762*2884762294559960838Gluconacetobacter diazotrophicus PAl 5, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_002947:48050604805060483118826129Pseudomonas putida KT2440, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_015957:52259035225903524815322251Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_015957:61193466119346619590076555Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_020126:55586135558613560639247780Myxococcus stipitatus DSM 14675, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_020126:5608880*5608880564065231773Myxococcus stipitatus DSM 14675, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012560:2546000*2546000257242526426Azotobacter vinelandii DJ, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012792:96229296229299068328392Variovorax paradoxus S110 chromosome 2, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013722:850307*85030787951329207Xanthomonas albilineans, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013961:2579000*2579000261224833249Erwinia amylovora, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014722:1971305*1971305199935928055Burkholderia rhizoxinica HKI 454, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_021150:2546000*2546000257243726438Azotobacter vinelandii CA6, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012721:16359991635999166922033222Burkholderia glumae BGR1 chromosome 2, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_015564:48499448499451314828155Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_020156:14470714470719254447838Nonlabens dokdonensis DSW-6, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_003155:3913789*3913789393748923701Streptomyces avermitilis MA-4680, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_003919:2435058*2435058245860723550Xanthomonas axonopodis pv. citri str. 306, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007005:2191500*2191500223078139282Pseudomonas syringae pv. syringae B728a, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008095:5585346*5585346562741242067Myxococcus xanthus DK 1622, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014718:102852*10285212309920248Burkholderia rhizoxinica HKI 454 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015711:6796082*6796082684217246091Myxococcus fulvus HW-1 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020453:10729791072979112047147493Agromonas oligotrophica S58 DNA, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020453:10842381084238114489760660Agromonas oligotrophica S58 DNA, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005773:5310339*5310339533285822520Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_008095:4189082*4189082423409745016Myxococcus xanthus DK 1622, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_014623:84633638463363848668823326Stigmatella aurantiaca DW4/3-1 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_014718:630188*63018865954429357Burkholderia rhizoxinica HKI 454 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_014153:21874092187409221140623998Thiomonas intermedia K12 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_005126:31217223121722318069058969Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008260:2340824*2340824238894248119Alcanivorax borkumensis SK2, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_013722:1785692*1785692183919253501Xanthomonas albilineans, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_007645:3934239*3934239396254628308Hahella chejuensis KCTC 2396, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009727:1542000*1542000156409922100Coxiella burnetii Dugway 7E9-12, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_011527:1443076*1443076146250819433Coxiella burnetii CbuG_Q212, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014483:23345002334500236409929600Paenibacillus polymyxa E681 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014483:4532000*4532000458655454555Paenibacillus polymyxa E681 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014623:6150028*6150028618651836491Stigmatella aurantiaca DW4/3-1 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_015690:44697754469775455660686832Paenibacillus mucilaginosus KNP414 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-0661.9BLASTN svgBLASTP svg