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Query: NC_004547:590844:606013 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 606013, End: 607677, Length: 1665

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012214:3502992:3515553351555335171991647Erwinia pyrifoliae Ep1/96, complete genomeType IVB pilus formation outer membrane protein2e-50201
NC_005126:2063667:2072176207217620737801605Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-45183
NC_018080:5091772:5123690512369051252641575Pseudomonas aeruginosa DK2 chromosome, complete genometype IVB pilus formation outer membrane protein2e-39164
NC_009656:4527457:4604150460415046058591710Pseudomonas aeruginosa PA7 chromosome, complete genometype IVB pilus formation outer membrane protein4e-38159
NC_008463:5246954:5278639527863952802761638Pseudomonas aeruginosa UCBPP-PA14, complete genomeType IV B pilus protein7e-38159
NC_004129:5373886:5400859540085954027001842Pseudomonas fluorescens Pf-5, complete genometype IV pilus protein, PilN9e-37155
NC_007005:1705406:1703673170367317054091737Pseudomonas syringae pv. syringae B728a, complete genometype II and III secretion system protein5e-36152
NC_007507:11000:1213112131138671737Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilN-like Bacterial type II and III secretion system protein5e-29129
NC_007950:185500:2030782030782047481671Polaromonas sp. JS666 plasmid 2, complete sequencetype II and III secretion system protein1e-23111
NC_015850:1155376:1174104117410411757381635Acidithiobacillus caldus SM-1 chromosome, complete genomePilN2e-1791.3
NC_010682:1624985:1624985162498516266761692Ralstonia pickettii 12J chromosome 1, complete sequencePilN2e-1584.3
NC_008757:77023:1034111034111050331623Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completelipoprotein2e-1274.7
NC_016616:2699350:2742273274227327439941722Dechlorosoma suillum PS chromosome, complete genometype II secretory pathway, component PulD3e-0963.9
NC_014972:3688000:3697159369715936989191761Desulfobulbus propionicus DSM 2032 chromosome, complete genometype II and III secretion system protein3e-0757
NC_008789:350650:3723233723233739391617Halorhodospira halophila SL1, complete genomepilus (MSHA type) biogenesis protein MshL5e-0756.6