Pre_GI: BLASTP Hits

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Query: NC_004547:442927:478617 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 478617, End: 479807, Length: 1191

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:3406570:3419551341955134218812331Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-37155
NC_015947:1290614:1307270130727013083971128Burkholderia sp. JV3 chromosome, complete genomehypothetical protein4e-30132
NC_010943:1426885:1451191145119114523181128Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane protein5e-29129
NC_006347:2861498:2872063287206328732531191Bacteroides fragilis YCH46, complete genomehypothetical protein2e-26120
NC_003228:2929006:2945676294567629468661191Bacteroides fragilis NCTC 9343, complete genomehypothetical protein2e-26120
NC_016776:2913966:2930656293065629318461191Bacteroides fragilis 638R, complete genomehypothetical protein2e-26120
NC_015164:3099097:3100321310032131015711251Bacteroides salanitronis DSM 18170 chromosome, complete genomeABC-2 type transporter6e-26118
NC_020829:4390417:4391683439168343928161134Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein4e-23109
NC_014655:2747399:2750437275043727515881152Leadbetterella byssophila DSM 17132 chromosome, complete genomeabc-2 type transporter2e-1687.4
NC_014107:171170:1806981806981829592262Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,hypothetical protein2e-1687
NC_009253:3317533:3323384332338433245141131Desulfotomaculum reducens MI-1 chromosome, complete genomeABC-2 type transporter2e-1687
NC_004547:442927:4798014798014809191119Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein6e-1685.5
NC_016510:4343:4343434355121170Flavobacterium columnare ATCC 49512 chromosome, complete genomeABC-2 type transporter1e-1584.3
NC_017098:1149145:1156365115636511575191155Spirochaeta africana DSM 8902 chromosome, complete genomemultidrug ABC transporter permease4e-1169.3
NC_015947:1290614:1308394130839413095811188Burkholderia sp. JV3 chromosome, complete genomeABC-2 type transporter3e-0963.2
NC_010943:1426885:1452315145231514535021188Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane permease component of ABC transporter3e-0963.2
NC_013385:1007616:1007616100761610087911176Ammonifex degensii KC4, complete genomeABC-2 type transporter8e-0858.5
NC_015164:3099097:3099097309909731003081212Bacteroides salanitronis DSM 18170 chromosome, complete genomeABC-2 type transporter4e-0756.2
NC_010995:4297361:4317944431794443190591116Cellvibrio japonicus Ueda107, complete genomeABC-type multidrug transport system, permease component9e-0755.1
NC_014614:478578:4953514953514964541104Clostridium sticklandii, complete genomemembrane protein of unknown function1e-0655.1