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Query: NC_004547:442927:465940 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 465940, End: 466024, Length: 85

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016816:3974895:39912913991291399137585Pantoea ananatis LMG 5342, complete genometRNA-Leu3e-0753.9
NC_013956:595320:60291360291360299785Pantoea ananatis LMG 20103 chromosome, complete genometRNA-Leu3e-0753.9
NC_017047:4298207:43084134308413430849785Rahnella aquatilis HX2 chromosome, complete genometRNA-Leu8e-0649.3
NC_016818:4215836:42392504239250423933485Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetRNA-Leu8e-0649.3
NC_015061:4203767:42144724214472421455685Rahnella sp. Y9602 chromosome, complete genometRNA-Leu8e-0649.3