Pre_GI: BLASTP Hits

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Query: NC_004547:442927:464646 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 464646, End: 465722, Length: 1077

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:478586:4814914814914825671077Pectobacterium wasabiae WPP163, complete genomepermease YjgP/YjgQ family protein1e-171602
NC_013592:446092:4490034490034500731071Dickeya dadantii Ech586, complete genomepermease YjgP/YjgQ family protein3e-149528
NC_012912:4194821:4205217420521742062871071Dickeya zeae Ech1591, complete genomepermease YjgP/YjgQ family protein9e-149526
NC_014500:443874:4502204502204512901071Dickeya dadantii 3937 chromosome, complete genomehypothetical protein1e-147522
NC_020211:554736:5611945611945622641071Serratia marcescens WW4, complete genomelipopolysaccharide export ABC permease of the LptBFGC export complex5e-146517
NC_012880:4117376:4126575412657541276451071Dickeya dadantii Ech703, complete genomepermease YjgP/YjgQ family protein1e-145516
NC_009832:622969:6258556258556269251071Serratia proteamaculans 568, complete genomepermease YjgP/YjgQ family protein4e-145514
NC_015567:547500:5504605504605515301071Serratia sp. AS9 chromosome, complete genomepermease YjgP/YjgQ family protein5e-144510
NC_015566:547387:5502745502745513441071Serratia sp. AS12 chromosome, complete genomepermease YjgP/YjgQ family protein5e-144510
NC_017047:4298207:4309943430994343110131071Rahnella aquatilis HX2 chromosome, complete genomelipopolysaccharide ABC transporter permease5e-143507
NC_015061:4203767:4216002421600242170721071Rahnella sp. Y9602 chromosome, complete genomepermease YjgP/YjgQ family protein5e-143507
NC_008800:575141:5780265780265790961071Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein6e-143507
NC_013971:3296272:3330072333007233311481077Erwinia amylovora ATCC 49946 chromosome, complete genomepermease4e-142504
NC_009381:3680638:3702753370275337038291077Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-141501
NC_007712:3629358:3648123364812336491931071Sodalis glossinidius str. 'morsitans', complete genomeputative transport protein3e-141501
NC_016832:4649432:4650511465051146515931083Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Lipopolysaccharide export system permease protein lptG1e-140499
NC_004631:4661000:4662431466243146635131083Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative inner membrane protein1e-140499
NC_003198:4676536:4679542467954246806241083Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative inner membrane protein1e-140499
NC_013716:3512950:3512950351295035140321083Citrobacter rodentium ICC168, complete genomeputative permease2e-140498
CP002797:4603787:4603787460378746048691083Escherichia coli NA114, complete genomeHypothetical protein1e-139496
NC_010473:4564590:4587149458714945882311083Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein9e-140496
CU928160:4570498:4571598457159845726801083Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein9e-140496
NC_000913:4462782:4485341448534144864231083Escherichia coli K12, complete genomeconserved inner membrane protein9e-140496
NC_010498:4821519:4842267484226748433491083Escherichia coli SMS-3-5, complete genomeputative permease9e-140496
AC_000091:4472000:4491998449199844930801083Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein9e-140496
NC_011741:4570498:4571598457159845726801083Escherichia coli IAI1 chromosome, complete genomehypothetical protein9e-140496
NC_011742:4795733:4816731481673148178131083Escherichia coli S88 chromosome, complete genomehypothetical protein9e-140496
NC_012967:4449576:4470545447054544716271083Escherichia coli B str. REL606 chromosome, complete genomeinner membrane protein9e-140496
NC_008258:4345400:4367779436777943688611083Shigella flexneri 5 str. 8401, complete genomehypothetical protein4e-138491
NC_007613:4217557:4231919423191942330041086Shigella boydii Sb227, complete genomehypothetical protein2e-138491
NC_020063:4127161:4146218414621841473001083Enterobacteriaceae bacterium strain FGI 57, complete genomeputative permease9e-138489
NC_016632:1695500:1706088170608817071611074Serratia symbiotica str. 'Cinara cedri' chromosome, completelipopolysaccharide export system permease protein5e-112404
NC_020418:116500:1551581551581562401083Morganella morganii subsp. morganii KT, complete genomePutative Permease2e-109395
NC_012913:280506:3036123036123046791068Aggregatibacter aphrophilus NJ8700, complete genomeconserved permease2e-96352
NC_008309:555680:5607555607555618251071Haemophilus somnus 129PT, complete genomeconserved permease1e-92339
NC_017270:2500815:2514774251477425158441071Vibrio cholerae LMA3984-4 chromosome chromosome I, completePermease4e-83308
NC_009053:1257302:1276024127602412771061083Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein3e-80298
NC_010278:1235934:1238052123805212391341083Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,permease3e-80298
NC_020829:4246847:4260980426098042620471068Pseudomonas denitrificans ATCC 13867, complete genomepermease2e-51202
NC_018080:1100047:1119067111906711201341068Pseudomonas aeruginosa DK2 chromosome, complete genomepermease1e-50200
NC_002516:4285477:4284417428441742854841068Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-50200
NC_011770:1226923:1244494124449412455611068Pseudomonas aeruginosa LESB58, complete genomeputative permease1e-50200
NC_008463:1223012:1240306124030612413731068Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative permease1e-50200
NC_013861:469500:4735714735714746411071Legionella longbeachae NSW150, complete genomemembrane protein1e-48194
NC_007963:3225306:3248193324819332492571065Chromohalobacter salexigens DSM 3043, complete genomepermease YjgP/YjgQ4e-41169
NC_002977:2254440:2260437226043722615071071Methylococcus capsulatus str. Bath, complete genomehypothetical protein2e-36153
NC_015136:813701:8252318252318263791149Burkholderia sp. CCGE1001 chromosome 1, complete sequencepermease YjgP/YjgQ family protein8e-28124
NC_006350:1084930:1120759112075911219101152Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative permease protein3e-24112
NC_008825:2063990:2080492208049220816131122Methylibium petroleiphilum PM1, complete genomehypothetical protein9e-22104
NC_020211:3535622:3541131354113135422101080Serratia marcescens WW4, complete genomeYjgP/YjgQ family permease4e-2099.4
NC_014306:4106569:4122488412248841235731086Erwinia billingiae Eb661, complete genomePredicted permease1e-1791.3
NC_011979:1683964:1683964168396416850371074Geobacter sp. FRC-32, complete genomepermease YjgP/YjgQ family protein1e-1274.7
NC_006677:295253:3149013149013160911191Gluconobacter oxydans 621H, complete genomehypothetical protein4e-1169.3
NC_007514:335085:3350853350853361641080Chlorobium chlorochromatii CaD3, complete genomehypothetical protein5e-0858.9
NC_010581:709626:7317207317207328081089Beijerinckia indica subsp. indica ATCC 9039, complete genomepermease YjgP/YjgQ family protein1e-0757.8
NC_010814:2758902:2773946277394627750251080Geobacter lovleyi SZ, complete genomepermease YjgP/YjgQ family protein8e-0755.1
NC_010125:2998619:3022558302255830236911134Gluconacetobacter diazotrophicus PAl 5, complete genomeputative permease1e-0654.3