Pre_GI: BLASTP Hits

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Query: NC_004547:1837500:1849384 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1849384, End: 1850334, Length: 951

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014622:724000:725554725554726447894Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator6e-76284
NC_010623:1961685:201867520186752019634960Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family4e-66251
NC_004547:1873390:188300518830051883862858Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator5e-38158
NC_016582:1639375:165691016569101657806897Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator1e-22107
NC_015434:1885373:188757818875781888468891Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix, arac domain-containing protein3e-22106
NC_016609:4233701:424485042448504245719870Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator4e-21102
NC_019673:3726519:373763037376303738475846Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator6e-1891.7
NC_013730:4502965:452028045202804521137858Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family1e-1687.4
NC_014934:4834000:483478048347804835673894Cellulophaga algicola DSM 14237 chromosome, complete genometranscriptional regulator, arac family2e-1686.7
NC_016114:7282882:730901673090167309861846Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeAraC family transcriptional regulator2e-1686.7
NC_014391:1812500:181434718143471815264918Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein1e-1584.3
NC_014815:2055286:205897420589742059891918Micromonospora sp. L5 chromosome, complete genomehelix-turn-helix, arac domain protein1e-1584.3
NC_009901:3317068:332237033223703323242873Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, AraC family3e-1582.8
NC_013132:705314:708270708270709112843Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family5e-1478.6
NC_017986:5605197:563115756311575632029873Pseudomonas putida ND6 chromosome, complete genomeHelix-turn-helix domain-containing protein1e-1377.8
NC_014624:2668157:271610827161082716983876Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator1e-1067.4
NC_013037:1015210:103550010355001036360861Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, AraC family1e-1067.4
NC_012880:1585255:160704616070461608035990Dickeya dadantii Ech703, complete genometranscriptional regulator, AraC family2e-1067
NC_013730:778076:782821782821783741921Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family2e-1067
NC_010468:4059436:405943640594364060326891Escherichia coli ATCC 8739, complete genometranscriptional regulator, AraC family2e-1066.6
NC_013730:4502965:452139745213974522266870Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family5e-1065.5
NC_014933:3856561:387760838776083878456849Bacteroides helcogenes P 36-108 chromosome, complete genometranscriptional regulator, AraC family4e-0962.4
NC_016609:6022778:603476460347646035642879Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator4e-0962.4
NC_014041:1395761:140434314043431404846504Zunongwangia profunda SM-A87 chromosome, complete genome4-hydroxyphenylacetate catabolism regulatory protein HpaA4e-0962.4
NC_003228:3085793:308968830896883090575888Bacteroides fragilis NCTC 9343, complete genomeputative AraC-family transcriptional regulator5e-0962
NC_019970:2080419:2097771209777120988261056Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain8e-0961.6
NC_015376:1752883:177295817729581773878921Burkholderia gladioli BSR3 chromosome chromosome 2, completeAraC family transcriptional regulator2e-0860.5
NC_014655:2366201:237290323729032373763861Leadbetterella byssophila DSM 17132 chromosome, complete genometranscriptional regulator, arac family2e-0860.5
NC_008543:259450:2786092786092800871479Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-0859.3
NC_004129:926479:934135934135934989855Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family3e-0859.3
NC_010338:4148667:416203941620394162932894Caulobacter sp. K31, complete genometranscriptional regulator, AraC family4e-0859.3
NC_018524:4988810:501243150124315012778348Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory helix-turn-helix s, AraC family protein4e-0858.9
NC_019960:1658657:173379017337901734695906Prevotella dentalis DSM 3688 chromosome 1, complete sequenceDNA-binding domain-containing protein, AraC-type8e-0858.2
NC_013730:2359939:235993923599392360808870Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family9e-0857.8
NC_012962:1041518:106408610640861064976891Photorhabdus asymbiotica, complete genomeregulator of the 4hpa-hydroxylase operon1e-0757.4
NC_004663:2246756:224892422489242249814891Bacteroides thetaiotaomicron VPI-5482, complete genomeputative transcriptional regulator1e-0757.4
NC_009614:3476000:349131434913143492150837Bacteroides vulgatus ATCC 8482 chromosome, complete genometranscriptional regulator2e-0757
NC_004663:1365429:137704613770461377882837Bacteroides thetaiotaomicron VPI-5482, complete genomeAraC-type transcription regulator2e-0756.6
NC_009615:919495:925663925663926541879Parabacteroides distasonis ATCC 8503 chromosome, complete genometranscriptional regulator3e-0756.2
NC_004663:2437760:247120524712052472053849Bacteroides thetaiotaomicron VPI-5482, complete genometranscriptional regulator4e-0755.8
NC_013132:1652477:165247716524771653346870Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family5e-0755.5
NC_012691:2050957:205611820561182057017900Tolumonas auensis DSM 9187, complete genometranscriptional regulator, AraC family5e-0755.5
NC_009441:3562125:357912935791293579977849Flavobacterium johnsoniae UW101 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0754.7
NC_020063:4653422:465342246534224654258837Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain9e-0754.7
NC_007511:3080849:3079368307936830808521485Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family9e-0754.7
NC_011601:2139188:218185521818552182772918Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomepdu/cob regulatory protein1e-0654.3
NC_016935:2256000:2263967226396722655561590Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-0653.9
NC_015690:1726000:1733764173376417353621599Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYesN41e-0653.9
NC_013406:3819577:3837326383732638390081683Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator1e-0653.9
NC_006347:2375480:238632923863292387168840Bacteroides fragilis YCH46, complete genomeAraC-type transcription regulator2e-0653.5
NC_003228:2437288:244229724422972443136840Bacteroides fragilis NCTC 9343, complete genomeputative AraC-type transcriptional regulator2e-0653.5
NC_012914:5618000:562146656214665622317852Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-0653.5
NC_016776:2516149:252699725269972527836840Bacteroides fragilis 638R, complete genomeputative AraC-type transcriptional regulator2e-0653.5
NC_007974:2097334:2111901211190121129471047Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, AraC family2e-0653.5
NC_014923:79370:825898258983569981Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehelix-turn-helix- domain containing protein AraC type2e-0653.5
NC_015164:1952500:197383319738331974720888Bacteroides salanitronis DSM 18170 chromosome, complete genometranscriptional regulator, AraC family2e-0653.1
NC_003228:3934770:394874239487423949587846Bacteroides fragilis NCTC 9343, complete genomeputative AraC-family regulatory protein2e-0653.1
NC_016776:3973428:398739639873963988241846Bacteroides fragilis 638R, complete genomeputative AraC-family regulatory protein2e-0653.1
NC_015703:4483500:451260045126004513517918Runella slithyformis DSM 19594 chromosome, complete genomeAraC family transcriptional regulator3e-0652.8
NC_010552:293703:3209503209503224251476Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-0652.8
NC_009441:3522519:353988035398803540680801Flavobacterium johnsoniae UW101 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0652.8
NC_006347:4031000:404498540449854045563579Bacteroides fragilis YCH46, complete genometranscriptional regulator5e-0652.4