Pre_GI: BLASTP Hits

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Query: NC_004547:164000:169392 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 169392, End: 170366, Length: 975

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016816:127802:1546671546671556861020Pantoea ananatis LMG 5342, complete genomeglycosyl transferase family protein8e-22104
NC_014166:2217790:224016022401602241113954Arcobacter nitrofigilis DSM 7299 chromosome, complete genomefamily 9 glycosyl transferase4e-1995.5
NC_019978:2396000:2405704240570424067051002Halobacteroides halobius DSM 5150, complete genomelipopolysaccharide heptosyltransferase II1e-1584.3
NC_009675:4281249:4295824429582442970351212Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeglycosyl transferase family protein2e-1479.7
NC_016822:4093000:4096615409661540976731059Shigella sonnei 53G, complete genomelipopolysaccharide core biosynthesis protein7e-1374.7
NC_007384:3956465:3959755395975539608131059Shigella sonnei Ss046, complete genomelipopolysaccharide core biosynthesis protein7e-1374.7
NC_013361:4991020:4995452499545249965101059Escherichia coli O26:H11 str. 11368 chromosome, complete genomelipopolysaccharide core biosynthesis protein8e-1374.7
NC_011027:1971580:1977317197731719783841068Chlorobaculum parvum NCIB 8327, complete genomeglycosyl transferase family 99e-1374.7
NC_004431:4223232:4238067423806742391251059Escherichia coli CFT073, complete genomeLipopolysaccharide core biosynthesis glycosyl transferase rfaQ1e-1274.3
NC_010658:3774110:3789891378989137909491059Shigella boydii CDC 3083-94, complete genomelipopolysaccharide core biosynthesis glycosyltransferase RfaQ2e-1273.6
NC_007606:3784847:3799338379933838003961059Shigella dysenteriae Sd197, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
CU928145:4167043:4182091418209141831491059Escherichia coli 55989 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_002655:4606000:4619911461991146209691059Escherichia coli O157:H7 EDL933, complete genomeputative LPS biosynthesis enzyme2e-1273.2
NC_009800:3821824:3836650383665038377081059Escherichia coli HS, complete genomelipopolysaccharide core biosynthesis glycosyltransferase RfaQ2e-1273.2
CP002516:88500:9207792077931351059Escherichia coli KO11, complete genomelipopolysaccharide heptosyltransferase III2e-1273.2
NC_011748:4167043:4182091418209141831491059Escherichia coli 55989, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_004741:3992384:3997592399759239986501059Shigella flexneri 2a str. 2457T, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_004337:3761865:3776567377656737776251059Shigella flexneri 2a str. 301, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
CU928160:3862935:3877761387776138788191059Escherichia coli IAI1 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_004337:3590323:3776567377656737776251059Shigella flexneri 2a str. 301, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_011353:4639002:4654032465403246550901059Escherichia coli O157:H7 str. EC4115 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_011741:3862935:3877761387776138788191059Escherichia coli IAI1 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_012967:3729813:3745424374542437464821059Escherichia coli B str. REL606 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_013941:4427000:4440873444087344419311059Escherichia coli O55:H7 str. CB9615 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-1273.2
NC_016902:88500:9207792077931351059Escherichia coli KO11FL chromosome, complete genomelipopolysaccharide heptosyltransferase III2e-1273.2
NC_017328:3794105:3808807380880738098651059Shigella flexneri 2002017 chromosome, complete genomeputative ADP-heptose:LPS heptosyltransferase2e-1273.2
NC_007946:4050762:4065597406559740666551059Escherichia coli UTI89, complete genomelipopolysaccharide core biosynthesis glycosyl transferase rfaQ3e-1272.8
NC_008563:4083558:4098393409839340994511059Escherichia coli APEC O1, complete genomelipopolysaccharide core biosynthesis glycosyl transferase RfaQ3e-1272.8
NC_011742:3998285:4013120401312040141781059Escherichia coli S88 chromosome, complete genomelipopolysaccharide core biosynthesis protein3e-1272.8
NC_008609:2254392:2258393225839322594781086Pelobacter propionicus DSM 2379, complete genomeglycosyl transferase, family 94e-1272.4
NC_011745:4226186:4241233424123342422911059Escherichia coli ED1a chromosome, complete genomelipopolysaccharide core biosynthesis protein4e-1272.4
NC_011750:4307166:4321989432198943230471059Escherichia coli IAI39 chromosome, complete genomelipopolysaccharide core biosynthesis protein5e-1272.4
NC_010498:4031500:4045090404509040461481059Escherichia coli SMS-3-5, complete genomelipopolysaccharide core biosynthesis glycosyltransferase RfaQ5e-1272
NC_015388:1861710:1876440187644018776931254Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeglycosyl transferase family 91e-1171.2
NC_007613:3637832:3652667365266736537251059Shigella boydii Sb227, complete genomelipopolysaccharide core biosynthesis protein1e-1171.2
NC_020063:97436:1005741005741016231050Enterobacteriaceae bacterium strain FGI 57, complete genomelipopolysaccharide heptosyltransferase III, putative8e-1271.2
NC_013156:471978:4719784719784731231146Methanocaldococcus fervens AG86, complete genomeglycosyl transferase family 92e-1170.1
NC_013156:471978:4857614857614868011041Methanocaldococcus fervens AG86, complete genomeglycosyl transferase family 92e-1170.1
NC_011751:4251296:4266347426634742674051059Escherichia coli UMN026 chromosome, complete genomelipopolysaccharide core biosynthesis protein1e-1067.8
NC_012483:848750:8536408536408547221083Acidobacterium capsulatum ATCC 51196, complete genomeheptosyltransferase family protein1e-1067.4
NC_011027:1971580:197876419787641979651888Chlorobaculum parvum NCIB 8327, complete genomeglycosyl transferase family 99e-1064.7
NC_013364:4460500:4474470447447044754921023Escherichia coli O111:H- str. 11128, complete genomelipopolysaccharide core biosynthesis protein RfaQ8e-1064.7
NC_015185:792933:8110808110808120811002Desulfurobacterium thermolithotrophum DSM 11699 chromosome,lipopolysaccharide heptosyltransferase II1e-0964.3
NC_012947:94930:9799197991990131023Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelipopolysaccharide core biosynthesis protein2e-0963.5
CP002185:3998112:4012938401293840139601023Escherichia coli W, complete genomelipopolysaccharide core biosynthesis protein2e-0963.5
AP010958:4668181:4672649467264946736711023Escherichia coli O103:H2 str. 12009 DNA, complete genomelipopolysaccharide core biosynthesis protein RfaQ2e-0963.5
NC_008258:3995553:4000758400075840017801023Shigella flexneri 5 str. 8401, complete genomelipopolysaccharide core biosynthesis protein2e-0963.5
NC_002695:4537000:4550928455092845519501023Escherichia coli O157:H7 str. Sakai, complete genomeRfaQ2e-0963.5
NC_010468:80000:8368483684847061023Escherichia coli ATCC 8739, complete genomelipopolysaccharide heptosyltransferase III2e-0963.5
NC_009801:4108179:4123005412300541240271023Escherichia coli E24377A, complete genomelipopolysaccharide core biosynthesis glycosyltransferase RfaQ2e-0963.5
NC_011415:4040211:4055259405525940562811023Escherichia coli SE11 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-0963.5
NC_013008:4595043:4610073461007346110951023Escherichia coli O157:H7 str. TW14359 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-0963.5
NC_013353:4668181:4672649467264946736711023Escherichia coli O103:H2 str. 12009, complete genomelipopolysaccharide core biosynthesis protein RfaQ2e-0963.5
NC_008253:3896704:3911539391153939125611023Escherichia coli 536, complete genomelipopolysaccharide core biosynthesis glycosyl transferase WaaQ3e-0962.8
NC_008609:3732192:3742558374255837437871230Pelobacter propionicus DSM 2379, complete genomeglycosyl transferase, family 93e-0962.8
NC_011601:4036590:4053438405343840544601023Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomelipopolysaccharide core biosynthesis protein4e-0962.4
NC_010634:635362:6384366384366396291194Yersinia pseudotuberculosis PB1/+, complete genomelipopolysaccharide heptosyltransferase III6e-0962
NC_016816:127802:159151159151160104954Pantoea ananatis LMG 5342, complete genomeglycosyl transferase family protein9e-0961.2
NC_013421:4790696:4798411479841147994811071Pectobacterium wasabiae WPP163, complete genomelipopolysaccharide heptosyltransferase III2e-0860.5
NC_013960:1319349:1324582132458213256851104Nitrosococcus halophilus Nc4 chromosome, complete genomeglycosyl transferase family 98e-0858.2
NC_015636:41968:4691146911480831173Methanothermococcus okinawensis IH1 chromosome, complete genomeglycosyl transferase family 99e-0857.8
NC_006155:652500:6559846559846570241041Yersinia pseudotuberculosis IP 32953, complete genomeputative lipopolysaccharide core biosynthesis protein2e-0756.6
NC_011296:909558:912444912444913442999Thermodesulfovibrio yellowstonii DSM 11347, complete genomelipopolysaccharide heptosyltransferase II3e-0756.2
NC_015562:222000:2427082427082438771170Methanotorris igneus Kol 5 chromosome, complete genomeglycosyl transferase family 94e-0755.8
NC_014166:2217790:2245608224560822466181011Arcobacter nitrofigilis DSM 7299 chromosome, complete genomelipopolysaccharide heptosyltransferase I5e-0755.5
NC_017187:1683619:1707466170746617084701005Arcobacter butzleri ED-1, complete genomelipopolysaccharide heptosyltransferase I9e-0754.7
NC_007514:1936812:1940244194024419412871044Chlorobium chlorochromatii CaD3, complete genomeheptosyltransferase1e-0654.7
NC_015177:1476073:1485446148544614865191074Pedobacter saltans DSM 12145 chromosome, complete genomeglycosyl transferase family 91e-0654.3
NC_013730:7743954:777134377713437772332990Spirosoma linguale DSM 74, complete genomeglycosyl transferase family 91e-0551.2