Pre_GI: BLASTP Hits

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Query: NC_004547:164000:164389 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 164389, End: 164985, Length: 597

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:4790696:481487048148704815466597Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, TetR family8e-97352
NC_009648:4359875:436248843624884363084597Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomenucleoid occlusion protein8e-83306
NC_012731:5074000:507666750766675077263597Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomenucleoid occlusion protein8e-83306
NC_016845:5162481:516554751655475166143597Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,nucleoid occlusion protein8e-83306
NC_011740:4007000:403120540312054031801597Escherichia fergusonii ATCC 35469, complete genomedivision inhibitor8e-83306
NC_008253:3896704:391896439189643919560597Escherichia coli 536, complete genomeputative TetR-family transcriptional regulator8e-83306
NC_011601:4036590:406086440608644061460597Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomenucleoid occlusion protein8e-83306
NC_011745:4226186:424865842486584249254597Escherichia coli ED1a chromosome, complete genomenucleoid occlusion protein8e-83306
NC_015761:3611993:363512536351253635721597Salmonella bongori NCTC 12419, complete genomeTetR family transcriptional regulator7e-83306
NC_009801:4108179:413043041304304131026597Escherichia coli E24377A, complete genometranscriptional regulator domain protein, TetR family1e-82305
CU928160:3862935:388517738851773885773597Escherichia coli IAI1 chromosome, complete genomedivision inhibitor1e-82305
NC_011751:4251296:427377242737724274368597Escherichia coli UMN026 chromosome, complete genomenucleoid occlusion protein1e-82305
CP002185:3998112:402036340203634020959597Escherichia coli W, complete genomedivision inhibitor1e-82305
CU928145:4167043:418951641895164190112597Escherichia coli 55989 chromosome, complete genomedivision inhibitor1e-82305
NC_010498:4031500:405251540525154053111597Escherichia coli SMS-3-5, complete genometranscriptional regulator domain-containing protein1e-82305
NC_011748:4167043:418951641895164190112597Escherichia coli 55989, complete genomenucleoid occlusion protein1e-82305
NC_000913:3786124:381251738125173813113597Escherichia coli K12, complete genomenucleoid occlusion protein1e-82305
NC_009800:3821824:384407538440753844671597Escherichia coli HS, complete genometranscriptional regulator domain protein, TetR family1e-82305
NC_011750:4307166:432941443294144330010597Escherichia coli IAI39 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_002695:4537000:455835345583534558949597Escherichia coli O157:H7 str. Sakai, complete genomenucleoid occlusion protein1e-82305
NC_010658:3774110:379731637973163797912597Shigella boydii CDC 3083-94, complete genometranscriptional regulator domain protein, TetR family1e-82305
NC_004431:4223232:424545042454504246088639Escherichia coli CFT073, complete genomenucleoid occlusion protein2e-82305
NC_010473:3883701:391009439100943910690597Escherichia coli str. K-12 substr. DH10B, complete genomedivision inhibitor1e-82305
NC_011353:4639002:466145746614574662053597Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_010694:63654:826768267683272597Erwinia tasmaniensis, complete genomePutative transcriptional regulator9e-83305
NC_009792:4658909:467977846797784680374597Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-83305
NC_013971:73037:100096100096100692597Erwinia amylovora ATCC 49946 chromosome, complete genomeTetR family transcriptional regulator1e-82305
NC_013961:73037:100096100096100692597Erwinia amylovora, complete genomeHTH-type protein slmA1e-82305
NC_017328:3794105:381700838170083817604597Shigella flexneri 2002017 chromosome, complete genomeputative transcriptional regulator1e-82305
NC_013941:4427000:444829844482984448894597Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHTH-type protein slmA1e-82305
NC_013364:4460500:448189544818954482491597Escherichia coli O111:H- str. 11128, complete genomedivision inhibitor Ttk1e-82305
NC_013008:4595043:461749846174984618094597Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_011415:4040211:406268440626844063280597Escherichia coli SE11 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_011741:3862935:388517738851773885773597Escherichia coli IAI1 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_011742:3998285:402054540205454021141597Escherichia coli S88 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_012759:3675396:370084337008433701439597Escherichia coli BW2952 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_012967:3729813:375284937528493753445597Escherichia coli B str. REL606 chromosome, complete genomenucleoid occlusion protein1e-82305
NC_008563:4083558:410577641057764106414639Escherichia coli APEC O1, complete genomeputative transcriptional regulator3e-82304
NC_007946:4050762:407298040729804073618639Escherichia coli UTI89, complete genomeputative transcriptional regulator3e-82304
NC_007613:3637832:366005036600503660688639Shigella boydii Sb227, complete genomeputative transcriptional regulator3e-82304
NC_004337:3761865:378476637847663785404639Shigella flexneri 2a str. 301, complete genomenucleoid occlusion protein3e-82304
NC_007606:3784847:380672138067213807359639Shigella dysenteriae Sd197, complete genomeputative transcriptional regulator3e-82304
NC_004337:3590323:378476637847663785404639Shigella flexneri 2a str. 301, complete genomenucleoid occlusion protein3e-82304
NC_006511:3690828:371394437139443714540597Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnucleoid occlusion protein2e-82304
NC_011147:3686500:370961437096143710210597Salmonella enterica subsp. enterica serovar Paratyphi A strnucleoid occlusion protein2e-82304
NC_011083:3915500:393829539382953938891597Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator domain protein, TetR family4e-82303
NC_006905:3845000:386758538675853868181597Salmonella enterica subsp. enterica serovar Choleraesuis strnucleoid occlusion protein4e-82303
NC_011149:3822000:384465238446523845248597Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator domain protein, TetR family4e-82303
NC_010102:3851500:387423238742323874828597Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-82303
NC_003197:3902500:392528539252853925881597Salmonella typhimurium LT2, complete genomenucleoid occlusion protein4e-82303
NC_011080:3875320:389843638984363899032597Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator domain protein, TetR family4e-82303
NC_011283:105245:119430119430120026597Klebsiella pneumoniae 342 chromosome, complete genomenucleoid occlusion protein6e-82303
NC_013850:109500:124626124626125222597Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, TetR family6e-82303
NC_011094:3778000:380137138013713801967597Salmonella enterica subsp. enterica serovar Schwarzengrund strnucleoid occlusion protein4e-82303
NC_011205:3942500:396498639649863965582597Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853nucleoid occlusion protein4e-82303
NC_017046:3923000:394542639454263946022597Salmonella enterica subsp. enterica serovar Typhimurium str. 798TetR-family transcriptional regulator4e-82303
NC_016863:3864000:388658438865843887180597Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1nucleoid occlusion protein4e-82303
NC_016860:3925500:394818139481813948777597Salmonella enterica subsp. enterica serovar Typhimurium strnucleoid occlusion protein4e-82303
NC_016857:3924000:394660039466003947196597Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74nucleoid occlusion protein4e-82303
NC_016856:3916500:393897739389773939573597Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Snucleoid occlusion protein4e-82303
NC_016810:3923988:394659939465993947195597Salmonella enterica subsp. enterica serovar Typhimurium strputative TetR family transcriptional regulator4e-82303
NC_012125:3840000:386243838624383863034597Salmonella enterica subsp. enterica serovar Paratyphi C strainnucleoid occlusion protein4e-82303
NC_011294:3782655:380638938063893806985597Salmonella enterica subsp. enterica serovar Enteritidis strnucleoid occlusion protein4e-82303
NC_002655:4606000:462729446272944627932639Escherichia coli O157:H7 EDL933, complete genomenucleoid occlusion protein1e-81302
NC_016816:127802:143853143853144449597Pantoea ananatis LMG 5342, complete genomeHTH-type protein SlmA1e-78292
NC_016602:173314:174653174653175243591Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceTetR family transcriptional regulator4e-65247
NC_013456:212150:213521213521214111591Vibrio sp. Ex25 chromosome 1, complete genometranscriptional regulator9e-65246
NC_008700:367949:392054392054392647594Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family4e-57220
NC_003910:187630:191621191621192217597Colwellia psychrerythraea 34H, complete genomenucleoid occlusion protein4e-51201
NC_012913:2189862:219078621907862191385600Aggregatibacter aphrophilus NJ8700, complete genometranscriptional regulator, TetR family1e-45182
NC_013416:386301:401757401757402356600Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscriptional regulator, TetR family9e-46182
NC_016513:689689:705146705146705745600Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completenucleoid occlusion protein9e-46182
NC_013446:4723380:472676747267674727462696Comamonas testosteroni CNB-2, complete genometranscriptional regulator, TetR family1e-34145
NC_010002:2933909:295690429569042957512609Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family9e-0753.5
NC_008609:1976403:207035320703532070961609Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, TetR family1e-0653.1
NC_014365:2004332:201289820128982013506609Desulfarculus baarsii DSM 2075 chromosome, complete genometranscriptional regulator, TetR family2e-0652.4
NC_016112:364723:383161383161383769609Methylomicrobium alcaliphilum chromosome, complete genomeTetR family transcriptional regulator5e-0650.8