Pre_GI: BLASTP Hits

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Query: NC_004463:925140:928365 Bradyrhizobium japonicum USDA 110, complete genome

Start: 928365, End: 932270, Length: 3906

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020126:2979959:3002814300281430067433930Myxococcus stipitatus DSM 14675, complete genomehypothetical protein0731
NC_011880:56543:7357773577778064230Cyanothece sp. PCC 7425 plasmid pP742501, complete sequencehypothetical protein3e-179630
NC_009076:3564500:3588455358845535928404386Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein8e-161568
NC_009648:5119271:5147740514774051518104071Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeATP phosphoribosyltransferase2e-160567
NC_008786:1298817:1303927130392713082854359Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein3e-158560
NC_006350:845513:8818058818058860494245Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein3e-154546
NC_012731:600518:6340556340556380864032Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeATP phosphoribosyltransferase8e-150532
NC_013510:2937530:2948060294806029521004041Thermomonospora curvata DSM 43183, complete genomehypothetical protein8e-134479
NC_014210:3248526:3256610325661032607014092Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein1e-133478
NC_017249:8510121:8510121851012185140593939Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-121437
NC_013521:345308:3562673562673603104044Sanguibacter keddieii DSM 10542, complete genomehypothetical protein5e-119429
NC_008705:868623:9010879010879051064020Mycobacterium sp. KMS, complete genomeconserved hypothetical protein1e-117425
NC_008146:861319:8923588923588963774020Mycobacterium sp. MCS, complete genomehypothetical protein1e-117425
NC_014830:3387479:3405417340541734095024086Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein1e-117425
NC_013530:2492312:2517212251721225213124101Xylanimonas cellulosilytica DSM 15894, complete genomehypothetical protein5e-107390
NC_013235:508585:5085855085855126284044Nakamurella multipartita DSM 44233, complete genomehypothetical protein1e-94348
NC_018581:2768743:2814836281483628188914056Gordonia sp. KTR9 chromosome, complete genomeType II restriction enzyme, methylase subunits3e-91337
NC_010831:931961:9501289501289540003873Chlorobium phaeobacteroides BS1, complete genomehypothetical protein1e-89332
NC_008639:1462000:1480653148065314845013849Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein2e-89331
NC_014365:2843126:2868884286888428729844101Desulfarculus baarsii DSM 2075 chromosome, complete genomehypothetical protein3e-87324
NC_008278:256427:2599032599032642224320Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative N-6 Adenine-specific DNA methylase domain.3e-86321
NC_008782:2326439:2326439232643923289792541Acidovorax sp. JS42, complete genomehypothetical protein4e-84313
NC_015510:3543352:3550469355046935551394671Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein1e-80302
NC_013510:465188:4737794737794753891611Thermomonospora curvata DSM 43183, complete genomehypothetical protein1e-61239
NC_010424:422029:4280804280804328254746Candidatus Desulforudis audaxviator MP104C, complete genomehypothetical protein8e-48193
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease1e-43179
NC_013158:1686239:1703027170302717070584032Halorhabdus utahensis DSM 12940, complete genomerestriction/modification enzyme5e-42174
NC_013521:345308:360493360493361449957Sanguibacter keddieii DSM 10542, complete genome1e-37159
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit5e-37157
NC_008782:2326439:2330411233041123319491539Acidovorax sp. JS42, complete genomehypothetical protein3e-36154
NC_012030:165071:1845441845441886714128Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein2e-35151
NC_017278:48630:7631176311803093999Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein4e-32140
NC_012030:345837:3835923835923868883297Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein5e-30134
NC_012856:2815797:2815797281579728197173921Ralstonia pickettii 12D chromosome 1, complete genomeputative type II DNA modification enzyme7e-30133
NC_007426:1840670:1871431187143118754594029Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme4e-28128
NC_015572:3091707:3104253310425331086954443Methylomonas methanica MC09 chromosome, complete genomehypothetical protein6e-28127
NC_013946:415028:4218694218694261494281Meiothermus ruber DSM 1279 chromosome, complete genomehypothetical protein7e-28127
NC_005125:2887319:2904118290411829084464329Gloeobacter violaceus PCC 7421, complete genomehypothetical protein4e-27124
NC_015573:2323268:2323268232326823273084041Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein3e-27124
NC_006677:1596560:1654143165414316589754833Gluconobacter oxydans 621H, complete genomePutative type II DNA modification enzyme1e-26122
NC_008697:55406:7324973249772443996Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceputative type II DNA modification enzyme2e-26122
NC_013440:971717:9717179717179768465130Haliangium ochraceum DSM 14365, complete genomehypothetical protein2e-25119
NC_007333:810381:8465718465718505363966Thermobifida fusca YX, complete genomeputative type II DNA modification enzyme4e-25117
NC_007645:3934239:3942388394238839466324245Hahella chejuensis KCTC 2396, complete genomeType II restriction enzyme, methylase subunit6e-25117
NC_019962:2736815:2752702275270227566673966Natrinema pellirubrum DSM 15624, complete genometype I restriction-modification system methyltransferase subunit3e-24115
NC_013595:8603188:8626853862685386309294077Streptosporangium roseum DSM 43021, complete genomeputative type II DNA modification enzyme2e-24115
NC_015167:2663686:2672070267207026768244755Cellulophaga lytica DSM 7489 chromosome, complete genomeplasmid-like protein4e-24114
NC_014820:1517927:1527616152761615315873972Cenarchaeum symbiosum A, complete genometype II restriction enzyme, methylase subunit4e-24114
NC_015576:612164:6209636209636255584596Mycobacterium sp. JDM601 chromosome, complete genomeputative type II restriction enzyme methylase subunit5e-24114
NC_014659:1731121:1742631174263117472204590Rhodococcus equi 103S, complete genomehypothetical protein5e-24114
NC_014151:3663295:3666135366613536701033969Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative type II DNA modification enzyme9e-24113
NC_018679:1738126:1742905174290517478664962Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeplasmid-like protein4e-23111
NC_013216:1442044:1450321145032114549944674Desulfotomaculum acetoxidans DSM 771, complete genomehypothetical protein5e-23110
NC_013941:5192500:5214907521490752198414935Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein8e-23110
NC_013008:5382917:5406351540635154112854935Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein8e-23110
NC_011353:5426793:5450290545029054552244935Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein8e-23110
NC_019902:2306961:2319086231908623241075022Thioalkalivibrio nitratireducens DSM 14787, complete genomeType II restriction enzyme, methylase subunit1e-22109
NC_013929:1799594:1808943180894318129744032Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-22108
NC_004369:3082691:3091247309124730958214575Corynebacterium efficiens YS-314, complete genomehypothetical protein2e-22108
NC_008686:1472899:1485429148542914898084380Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein2e-21105
NC_015711:3122000:3132062313206231360123951Myxococcus fulvus HW-1 chromosome, complete genometype II DNA modification enzyme2e-21105
NC_015957:2755709:2762477276247727674294953Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative type II restriction enzyme, methylase subunit5e-21104
NC_003911:2042389:2047955204795520508522898Silicibacter pomeroyi DSS-3, complete genomehypothetical protein1e-20103
NC_010554:2646806:2713633271363327186034971Proteus mirabilis HI4320, complete genomeplasmid-related protein4e-20101
NC_010815:40357:4147441474442302757Geobacter lovleyi SZ plasmid pGLOV01, complete sequencehypothetical protein9e-20100
NC_009921:8215996:8232858823285882369074050Frankia sp. EAN1pec, complete genomeconserved hypothetical protein2e-1999
NC_008740:1459747:1477293147729314825485256Marinobacter aquaeolei VT8, complete genomehypothetical protein3e-1998.6
NC_013757:3897413:3918472391847239231994728Geodermatophilus obscurus DSM 43160, complete genomehypothetical protein1e-1896.3
NC_013441:382597:3854153854153901364722Gordonia bronchialis DSM 43247, complete genometype II restriction enzyme, methylase subunit3e-1895.1
NC_009434:3611738:3728588372858837334954908Pseudomonas stutzeri A1501, complete genometype II restriction enzyme, methylase subunit6e-1894.4
NC_008358:1623278:1632909163290916349872079Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein6e-1894
NC_015576:808926:8261128261128286612550Mycobacterium sp. JDM601 chromosome, complete genomehypothetical protein1e-1793.2
NC_013441:27877:3596535965399633999Gordonia bronchialis DSM 43247, complete genomehypothetical protein1e-1792.8
NC_017080:1981788:1992712199271219961883477Phycisphaera mikurensis NBRC 102666, complete genomerestriction endonuclease/modification methylase2e-1792.8
NC_015588:1213873:1242115124211512470674953Isoptericola variabilis 225 chromosome, complete genomehypothetical protein4e-1791.7
NC_008278:6854759:6877269687726968820534785Frankia alni ACN14a, complete genomeputative Type II restriction enzyme, methylase subunit3e-1688.6
NC_012811:1105395:1108154110815411121433990Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative type II DNA modification enzyme4e-1688.2
NC_010172:280092:2957902957902997583969Methylobacterium extorquens PA1, complete genomeputative type II DNA modification enzyme6e-1687.4
NC_013730:4118355:4127499412749941309783480Spirosoma linguale DSM 74, complete genomeEco57I restriction endonuclease6e-1687.4
NC_014314:1230687:1237256123725612409813726Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completehypothetical protein1e-1586.3
NC_006513:148950:1489501489501534854536Azoarcus sp. EbN1, complete genomeN6 adenine-specific DNA methyltransferase4e-1584.7
NC_019968:1147409:1158767115876711629424176Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein5e-1584.3
NC_007493:1:5531553168231293Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceRNA-binding region RNP-12e-1482.4
NC_007802:3252300:3271614327161432742232610Jannaschia sp. CCS1, complete genomehypothetical protein3e-1482
NC_013407:1205747:1216519121651912201123594Methanocaldococcus vulcanius M7, complete genomehypothetical protein9e-1480.5
NC_015434:3755560:3768253376825337732895037Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein2e-1379
NC_013929:7278414:7288198728819872933725175Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-1377.8
NC_006347:3390193:3412654341265434164633810Bacteroides fragilis YCH46, complete genomeputative type IIS restriction/modification enzyme5e-1377.8
NC_017093:6461486:6467914646791464728604947Actinoplanes missouriensis 431, complete genomehypothetical protein8e-1377.4
NC_013929:2375613:2419372241937224248975526Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1276.3
NC_018524:557666:5691695691695723783210Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeeco57I restriction-modification methylase family protein3e-1275.5
NC_014926:1381152:1393971139397113978073837Thermovibrio ammonificans HB-1 chromosome, complete genomehypothetical protein2e-1172.8
NC_015164:2473496:2485877248587724889423066Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein5e-1171.2
NC_013222:1536203:1543931154393115469513021Robiginitalea biformata HTCC2501, complete genometype II restriction enzyme, methylase subunit3e-1068.6
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase1e-0863.5
NC_013890:191616:2058982058982092453348Dehalococcoides sp. GT chromosome, complete genomehypothetical protein6e-0860.8
NC_020156:2750000:2753388275338827566093222Nonlabens dokdonensis DSW-6, complete genometype II restriction enzyme, methylase9e-0860.5
NC_015578:3371171:3379332337933233821872856Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein1e-0759.7
NC_003116:1734000:1734140173414017365512412Neisseria meningitidis Z2491, complete genomehypothetical protein3e-0758.5
NC_010610:2013659:202617820261782027152975Lactobacillus fermentum IFO 3956, complete genomehypothetical protein4e-0758.5