Pre_GI: BLASTP Hits

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Query: NC_004463:8401060:8450294 Bradyrhizobium japonicum USDA 110, complete genome

Start: 8450294, End: 8450881, Length: 588

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:5110709:511634551163455116887543Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase6e-87319
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase2e-74278
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-24110
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module3e-22104
NC_010001:2125500:2128734212873421311752442Clostridium phytofermentans ISDg, complete genomeDNA ligase D8e-22103
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D7e-22103
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein5e-22103
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D2e-21102
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D2e-21102
NC_014923:3930669:394222939422293943092864Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase6e-21100
NC_015675:4442000:446120844612084462071864Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP dependent DNA ligase9e-2199.8
NC_014923:4017575:402602940260294026889861Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase4e-2097.4
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D1e-1892.8
NC_002678:6608697:662255766225576623438882Mesorhizobium loti MAFF303099, complete genomesimilar to ATP-dependent DNA ligase3e-1891.7
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase5e-1787.4
NC_008782:2683989:2685104268510426876172514Acidovorax sp. JS42, complete genomeDNA ligase (ATP)3e-1684.7
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase9e-1580.1
NC_005244:37546:532135321354172960Pseudomonas sp. ND6 plasmid pND6-1, complete sequenceATP-dependent DNA ligase2e-1375.9
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase6e-1373.9
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB6e-1373.9
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein6e-1373.9
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase1e-1169.3
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase2e-1168.9
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase2e-1168.9
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein2e-1168.6
NC_006322:1507411:150947515094751510284810Bacillus licheniformis ATCC 14580, complete genomeDNA ligase3e-1168.6
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD1e-1066.2
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase1e-1066.2
NC_017955:3670670:3671121367112136721941074Modestobacter marinus, complete genomeATP-dependent DNA ligase2e-1065.9
NC_011881:1:6008600870421035Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeATP dependent DNA ligase4e-1064.7
NC_015675:6276357:629051462905146291383870Mesorhizobium opportunistum WSM2075 chromosome, complete genome1e-0963.2
NC_019973:5650646:566480356648035665672870Mesorhizobium australicum WSM2073, complete genome1e-0963.2
NC_014923:5721686:573584357358435736712870Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete1e-0963.2
NC_013406:781308:791049791049791915867Paenibacillus sp. Y412MC10 chromosome, complete genomeATP-dependent DNA ligase1e-0962.8
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase4e-0961.2
NC_008271:140846:140846140846141817972Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceATP-dependent DNA ligase7e-0960.5
NC_015416:2723189:274416427441642745111948Methanosaeta concilii GP-6 chromosome, complete genomeDNA polymerase LigD7e-0960.5
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein7e-0960.5
NC_000868:500249:5140035140035156821680Pyrococcus abyssi GE5, complete genomeDNA ligase4e-0858.2
NC_014820:1057826:1077557107755710792901734Cenarchaeum symbiosum A, complete genomeATP-dependent DNA ligase1e-0756.6
NC_003413:1521080:1525737152573715274221686Pyrococcus furiosus DSM 3638, complete genomeDNA ligase1e-0756.2
NC_017954:1:24924920511803Thermogladius cellulolyticus 1633 chromosome, complete genomeATP-dependent DNA ligase2e-0755.8
NC_002678:3701500:373418737341873734645459Mesorhizobium loti MAFF303099, complete genomesimilar to part of DNA ligase3e-0755.1
NC_011529:1375920:1390140139014013918281689Thermococcus onnurineus NA1, complete genomethermostable DNA ligase7e-0753.9
NC_009439:2427120:2427120242712024287781659Pseudomonas mendocina ymp, complete genomeATP-dependent DNA ligase1e-0652.8
NC_015723:1998363:1996693199669319983661674Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig3e-0652
NC_015216:2422758:242601124260112426916906Methanobacterium sp. AL-21 chromosome, complete genomeATP dependent DNA ligase2e-0652
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent2e-0652
NC_003888:7659639:767133576713357672108774Streptomyces coelicolor A3(2), complete genomeDNA ligase5e-0651.2
NC_016645:1909507:1928088192808819297791692Pyrobaculum sp. 1860 chromosome, complete genomeDNA ligase5e-0651.2
NC_013849:19404:1940419404210711668Ferroglobus placidus DSM 10642 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl16e-0650.4
NC_014923:79370:7937079370809711602Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase9e-0650.1