Pre_GI: BLASTP Hits

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Query: NC_004463:8401060:8427807 Bradyrhizobium japonicum USDA 110, complete genome

Start: 8427807, End: 8428142, Length: 336

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017030:6878319:690000469000046900882879Corallococcus coralloides DSM 2259 chromosome, complete genomeribonuclease HII2e-23107
NC_007760:308500:324321324321325172852Anaeromyxobacter dehalogenans 2CP-C, complete genomeribonuclease H3e-23107
NC_011145:306623:326887326887327738852Anaeromyxobacter sp. K, complete genomeRibonuclease H4e-23106
NC_011891:315182:335393335393336244852Anaeromyxobacter dehalogenans 2CP-1, complete genomeRibonuclease H8e-23105
NC_015381:2859000:292778029277802928433654Burkholderia gladioli BSR3 chromosome 1, complete sequenceRibonuclease HII8e-1785.5
NC_009848:1542978:155788315578831558647765Bacillus pumilus SAFR-032, complete genomeribonuclease HII3e-1477
NC_016584:4860360:487549548754954876277783Desulfosporosinus orientis DSM 765 chromosome, complete genomeribonuclease HII8e-1475.9
NC_018515:3865522:388024138802413881023783Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeribonuclease HII8e-1475.5
NC_015966:2841420:286183828618382862434597Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeribonuclease H1e-1375.1
NC_015422:3581848:359769235976923598312621Alicycliphilus denitrificans K601 chromosome, complete genomeribonuclease H2e-1374.7
NC_013216:1219775:122327412232741224080807Desulfotomaculum acetoxidans DSM 771, complete genomeRibonuclease H1e-1272
NC_012471:1197534:120085812008581201631774Streptococcus equi subsp. equi 4047, complete genomeribonuclease HII3e-1270.5
NC_017208:3816753:385386838538683854641774Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeribonuclease HII5e-1269.7
NC_011658:3603009:364180436418043642577774Bacillus cereus AH187 chromosome, complete genomeribonuclease HII5e-1269.7
NC_011969:3575988:358576435857643586537774Bacillus cereus Q1 chromosome, complete genomeribonuclease hii6e-1269.7
NC_003909:3606177:362915736291573629930774Bacillus cereus ATCC 10987, complete genomeribonuclease HII6e-1269.7
NC_014328:1379437:139319713931971394054858Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative ribonuclease HII6e-1269.7
NC_020134:2237421:224799922479992248769771Clostridium stercorarium subsp. stercorarium DSM 8532, completeribonuclease HII7e-1269.3
NC_005957:3665657:367543236754323676205774Bacillus thuringiensis serovar konkukian str. 97-27, completeribonuclease HII1e-1168.9
NC_014335:3589726:360461336046133605386774Bacillus cereus biovar anthracis str. CI chromosome, completeribonuclease HII1e-1168.9
NC_014171:3726054:373773537377353738508774Bacillus thuringiensis BMB171 chromosome, complete genomeribonuclease HII1e-1168.9
NC_000918:1353310:137452113745211375111591Aquifex aeolicus VF5, complete genomeRNase HII9e-1268.9
NC_007530:3616828:365388636538863654659774Bacillus anthracis str. 'Ames Ancestor', complete genomeribonuclease HII9e-1268.9
NC_005945:3636321:365445436544543655227774Bacillus anthracis str. Sterne, complete genomeribonuclease HII9e-1268.9
NC_003997:3617000:365375936537593654532774Bacillus anthracis str. Ames, complete genomeribonuclease HII9e-1268.9
NC_012581:559182:584028584028584801774Bacillus anthracis str. CDC 684 chromosome, complete genomeribonuclease HII9e-1268.9
NC_012659:3617000:365378636537863654559774Bacillus anthracis str. A0248, complete genomeribonuclease HII9e-1268.9
NC_011772:3821917:382419338241933824966774Bacillus cereus G9842, complete genomeribonuclease HII1e-1168.6
NC_010382:1607013:162535616253561626117762Lysinibacillus sphaericus C3-41, complete genomeribonuclease HII2e-1167.8
NC_014926:1483974:150502115050211505749729Thermovibrio ammonificans HB-1 chromosome, complete genomeRibonuclease H2e-1167.4
NC_004461:921364:921364921364922134771Staphylococcus epidermidis ATCC 12228, complete genomeRNase HII2e-1167.4
NC_014483:1973233:198511019851101985757648Paenibacillus polymyxa E681 chromosome, complete genomeRibonuclease HII (RNase HII)3e-1167
NC_009495:2571732:257501025750102575819810Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeribonuclease HII5e-1166.6
NC_010520:2635750:263802726380272638836810Clostridium botulinum A3 str. Loch Maree, complete genomeribonuclease HII5e-1166.6
NC_014654:1529500:153231515323151533112798Halanaerobium sp. 'sapolanicus' chromosome, complete genomeRibonuclease H2e-1064.7
NC_016826:929259:932956932956933735780Streptococcus infantarius subsp. infantarius CJ18 chromosome,ribonuclease HII2e-1064.7
NC_019771:2816732:281890928189092819586678Anabaena cylindrica PCC 7122, complete genomeRNase HII4e-1063.5
NC_011297:1357947:135981013598101360421612Dictyoglomus thermophilum H-6-12, complete genomeribonuclease HII3e-1063.5
NC_014248:685656:703684703684704349666Nostoc azollae 0708 chromosome, complete genomeribonuclease H3e-1063.5
NC_014836:2325559:234480823448082345413606Desulfurispirillum indicum S5 chromosome, complete genomeribonuclease H5e-1063.2
UCMB5137:1159520:117677111767711177538768Bacillus atrophaeus UCMB-5137ribonuclease HII6e-1062.8
NC_015844:1100664:111782211178221118427606Zobellia galactanivorans, complete genomeribonuclease HII1e-0962
NC_015160:3749636:374963637496363750235600Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRibonuclease H1e-0962
NC_003272:5184000:518637551863755187052678Nostoc sp. PCC 7120, complete genomeribonuclease HII2e-0961.2
NC_011661:1542335:154419815441981544809612Dictyoglomus turgidum DSM 6724, complete genomeRibonuclease H2e-0961.2
NC_007413:1570000:157282115728211573498678Anabaena variabilis ATCC 29413, complete genomeRibonuclease HII/HIII2e-0961.2
NC_015846:445000:457566457566458159594Capnocytophaga canimorsus Cc5 chromosome, complete genomeribonuclease HII3e-0960.5
NC_015638:1885041:188828818882881888887600Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeribonuclease H4e-0960.1
NC_007799:968499:968499968499969128630Ehrlichia chaffeensis str. Arkansas, complete genomeribonuclease HII1e-0858.9
NC_014624:2668157:266854926685492669337789Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-0858.5
NC_017066:243913:243913243913244494582Rickettsia typhi str. TH1527 chromosome, complete genomeribonuclease HII2e-0857.8
NC_017062:244330:244330244330244911582Rickettsia typhi str. B9991CWPP chromosome, complete genomeribonuclease HII2e-0857.8
NC_006142:243899:243899243899244480582Rickettsia typhi str. Wilmington, complete genomeribonuclease HII2e-0857.8
NC_015164:2305415:230634223063422306944603Bacteroides salanitronis DSM 18170 chromosome, complete genomeRibonuclease H2e-0857.4
NC_013199:1407742:142265514226551423413759Lactobacillus rhamnosus Lc 705, complete genomeRibonuclease HII (RNase HII)3e-0857.4
NC_015577:2203835:222375222237522224327576Treponema azotonutricium ZAS-9 chromosome, complete genomeribonuclease HII3e-0857
NC_004663:4373902:439585143958514396453603Bacteroides thetaiotaomicron VPI-5482, complete genomeribonuclease HII3e-0857
NC_002967:1589069:159126415912641591860597Treponema denticola ATCC 35405, complete genomeribonuclease HII4e-0856.6
NC_016787:1509831:151838415183841519073690Corynebacterium diphtheriae HC03 chromosome, complete genomeribonuclease HII8e-0855.8
NC_016788:1509943:152184915218491522538690Corynebacterium diphtheriae HC04 chromosome, complete genomeribonuclease HII8e-0855.8
NC_014472:2275254:227939422793942279990597Flavobacteriales bacterium HTCC2170 chromosome, complete genomeribonuclease HII7e-0855.8
NC_002935:1534889:153849115384911539180690Corynebacterium diphtheriae NCTC 13129, complete genomeribonuclease HII7e-0855.8
NC_016782:1520324:152681715268171527506690Corynebacterium diphtheriae 241 chromosome, complete genomeribonuclease HII7e-0855.8
NC_016786:1519481:152708215270821527771690Corynebacterium diphtheriae HC01 chromosome, complete genomeribonuclease HII7e-0855.8
NC_016790:1480441:149434414943441495033690Corynebacterium diphtheriae VA01 chromosome, complete genomeribonuclease HII7e-0855.8
NC_017243:2778427:279598827959882796668681Brachyspira intermedia PWS/A chromosome, complete genomeribonuclease HII7e-0855.8
NC_016024:1974715:199796319979631998595633Candidatus Chloracidobacterium thermophilum B chromosome chromosomeRNase HII2e-0754.7
NC_016633:541559:548670548670549299630Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeribonuclease HII2e-0754.7
NC_014752:131994:150217150217150855639Neisseria lactamica ST-640, complete genomeribonuclease HII2e-0754.3
NC_014934:869715:894068894068894664597Cellulophaga algicola DSM 14237 chromosome, complete genomeribonuclease h5e-0753.1
NC_003103:266013:268353268353268934582Rickettsia conorii str. Malish 7, complete genomeribonuclease HII5e-0753.1
NC_017301:1425293:144011714401171440839723Corynebacterium pseudotuberculosis C231 chromosome, completeRibonuclease HII5e-0753.1
NC_017300:1426975:143772914377291438451723Corynebacterium pseudotuberculosis 1002 chromosome, completeRibonuclease HII5e-0753.1
NC_014329:1407880:144037114403711441093723Corynebacterium pseudotuberculosis FRC41 chromosome, completeribonuclease HII5e-0753.1
NC_016932:1414226:142497514249751425697723Corynebacterium pseudotuberculosis 316 chromosome, complete genomeribonuclease HII6e-0753.1