Pre_GI: BLASTP Hits

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Query: NC_004463:8401060:8417280 Bradyrhizobium japonicum USDA 110, complete genome

Start: 8417280, End: 8418641, Length: 1362

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011420:365505:3747223747223760831362Rhodospirillum centenum SW, complete genomeHlyD family secretion protein3e-66252
NC_019973:5601346:5601346560134656026831338Mesorhizobium australicum WSM2073, complete genometype I secretion membrane fusion protein, HlyD family3e-60233
NC_009439:794498:7998497998498011651317Pseudomonas mendocina ymp, complete genomeHlyD family type I secretion membrane fusion protein1e-59231
NC_015596:1592500:1594304159430415957941491Sinorhizobium meliloti AK83 chromosome 2, complete sequencetype I secretion membrane fusion protein HlyD family1e-56221
NC_017326:1122103:1122103112210311235931491Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequencetype I secretion membrane fusion protein1e-56221
NC_013960:2761353:2783986278398627851191134Nitrosococcus halophilus Nc4 chromosome, complete genome9e-56218
NC_015731:447411:4474114474114487631353Nitrosomonas sp. Is79A3 chromosome, complete genometype I secretion membrane fusion protein, HlyD family2e-54214
NC_014315:1396990:1399906139990614012731368Nitrosococcus watsoni C-113 chromosome, complete genomeHlyD family type I secretion membrane fusion protein2e-54213
NC_014836:223013:2459562459562472571302Desulfurispirillum indicum S5 chromosome, complete genomeHlyD family type I secretion membrane fusion protein4e-54212
NC_008435:1131242:1133468113346811348261359Rhodopseudomonas palustris BisA53, complete genometype I secretion membrane fusion protein, HlyD family1e-53211
NC_006831:250074:2500742500742516181545Ehrlichia ruminantium str. Gardel, complete genomeAlkaline protease secretion protein aprE8e-53208
NC_015733:1555476:1599470159947016007951326Pseudomonas putida S16 chromosome, complete genomeHlyD family secretion protein8e-53208
NC_005295:272708:2727082727082742521545Ehrlichia ruminantium str. Welgevonden, complete genomeputative secretion protein7e-53208
NC_006832:252952:2529522529522544961545Ehrlichia ruminantium str. Welgevonden, complete genomeAlkaline protease secretion protein aprE7e-53208
NC_007484:2045500:2058831205883120601981368Nitrosococcus oceani ATCC 19707, complete genomeType I secretion membrane fusion protein, HlyD1e-52207
NC_020211:1704500:1733040173304017343711332Serratia marcescens WW4, complete genomeHlyD family type I secretion membrane fusion protein4e-52206
NC_008435:3915110:3923991392399139252921302Rhodopseudomonas palustris BisA53, complete genometype I secretion membrane fusion protein, HlyD family1e-51204
NC_010511:2775465:2783680278368027849421263Methylobacterium sp. 4-46 chromosome, complete genomeHlyD family type I secretion membrane fusion protein1e-51204
NC_010511:3674178:3679096367909636804391344Methylobacterium sp. 4-46 chromosome, complete genomeHlyD family type I secretion membrane fusion protein2e-51203
NC_011369:3022235:3036512303651230378191308Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completeHlyD family type I secretion membrane fusion protein4e-51202
NC_002947:1988652:2018723201872320200481326Pseudomonas putida KT2440, complete genomeHlyD family secretion protein4e-51202
NC_010511:3674178:3751366375136637526731308Methylobacterium sp. 4-46 chromosome, complete genomeHlyD family type I secretion membrane fusion protein3e-51202
NC_010997:910938:9316689316689329781311Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative toxin secretion protein9e-50197
NC_007354:233991:2339912339912355081518Ehrlichia canis str. Jake, complete genomeType I secretion membrane fusion protein, HlyD2e-49197
NC_014006:611592:6249736249736263311359Sphingobium japonicum UT26S chromosome 1, complete genomeHlyD-family secretion protein3e-49196
NC_010510:139685:1559961559961573601365Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completetype I secretion membrane fusion protein, HlyD family4e-49196
NC_009832:1719149:1748151174815117494821332Serratia proteamaculans 568, complete genometype I secretion membrane fusion protein, HlyD family4e-49196
NC_008599:426078:4387734387734400561284Campylobacter fetus subsp. fetus 82-40, complete genomeSapE4e-49195
NC_005140:444353:4534704534704548101341Vibrio vulnificus YJ016 chromosome II, complete sequencemembrane-fusion protein9e-49194
NC_004460:1718088:1728169172816917295091341Vibrio vulnificus CMCP6 chromosome II, complete sequenceMembrane-fusion protein2e-48193
NC_014966:431342:4414234414234427631341Vibrio vulnificus MO6-24/O chromosome II, complete sequencemembrane-fusion protein2e-48193
NC_010994:3477000:3493442349344234947821341Rhizobium etli CIAT 652, complete genomeprotein secretion protein, HlyD family3e-48192
NC_014834:2206119:2230989223098922323561368Rhodopseudomonas palustris DX-1 chromosome, complete genomeHlyD family type I secretion membrane fusion protein7e-48191
NC_012850:4422966:4441647444164744429961350Rhizobium leguminosarum bv. trifolii WSM1325, complete genometype I secretion membrane fusion protein, HlyD family2e-47190
NC_008391:404388:4116534116534128791227Burkholderia cepacia AMMD chromosome 2, complete sequencetype I secretion membrane fusion protein, HlyD family6e-47188
NC_020064:1547524:1574437157443715757681332Serratia marcescens FGI94, complete genometype I secretion membrane fusion protein, HlyD family1e-46187
NC_005773:1135374:1172090117209011734121323Pseudomonas syringae pv. phaseolicola 1448A, complete genomeHlyD family secretion protein2e-46187
NC_015566:1659288:1691431169143116927621332Serratia sp. AS12 chromosome, complete genometype I secretion membrane fusion protein, HlyD family2e-46186
NC_015567:1660462:1691443169144316927741332Serratia sp. AS9 chromosome, complete genometype I secretion membrane fusion protein, HlyD family2e-46186
NC_016616:1861852:1866496186649618679051410Dechlorosoma suillum PS chromosome, complete genomeHlyD family type I secretion membrane fusion protein6e-46185
NC_002978:618723:6367746367746382941521Wolbachia endosymbiont of Drosophila melanogaster, complete genomesecretion protein, HlyD family7e-45181
NC_006833:409599:4095994095994110441446Wolbachia endosymbiont strain TRS of Brugia malayi, completeMembrane-fusion protein5e-44179
NC_012416:531772:5317725317725333641593Wolbachia sp. wRi, complete genomesecretion protein, HlyD family7e-44178
NC_007512:771975:8001618001618013421182Pelodictyon luteolum DSM 273, complete genomemetalloprotease secretion protein2e-33144
NC_012912:2426520:2426520242652024278661347Dickeya zeae Ech1591, complete genometype I secretion membrane fusion protein, HlyD family5e-33142
NC_012791:4680500:4698703469870347000191317Variovorax paradoxus S110 chromosome 1, complete genometype I secretion membrane fusion protein, HlyD family4e-31136
NC_007626:3393940:3410349341034934116801332Magnetospirillum magneticum AMB-1, complete genomeMembrane-fusion protein7e-31135
NC_015968:2195645:2215989221598922171641176Enterobacter asburiae LF7a chromosome, complete genomeHlyD family type I secretion membrane fusion protein7e-30132
NC_009802:647901:6519956519956534611467Campylobacter concisus 13826, complete genomeacriflavine resistance protein5e-30132
NC_014931:5594946:5613772561377256150881317Variovorax paradoxus EPS chromosome, complete genometype I secretion membrane fusion protein, HlyD family1e-29131
NC_015424:2695847:2708779270877927101971419Aeromonas veronii B565 chromosome, complete genomesecretion protein, HlyD family2e-29130
NC_013173:2305394:2317529231752923189711443Desulfomicrobium baculatum DSM 4028, complete genometype I secretion membrane fusion protein, HlyD family2e-29130
NC_020063:1051310:1066040106604010672301191Enterobacteriaceae bacterium strain FGI 57, complete genomemultidrug resistance efflux pump2e-29130
NC_017192:276187:2834902834902850071518Arcobacter sp. L, complete genomeHlyD family secretion protein2e-29130
NC_017192:1745114:1759951175995117613301380Arcobacter sp. L, complete genomesecretion protein1e-28127
NC_014121:2090630:2107605210760521087801176Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeRtxD/HlyD/CyaD protein of type I secretion system2e-28127
NC_014166:2498500:2531271253127125327071437Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeHlyD family type I secretion membrane fusion protein2e-27124
NC_008570:3013263:3030376303037630317941419Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomesecretion protein, HlyD family1e-27124
NC_013223:685628:6856286856286869711344Desulfohalobium retbaense DSM 5692, complete genometype I secretion membrane fusion protein, HlyD family2e-26120
NC_013716:3109700:3140026314002631413061281Citrobacter rodentium ICC168, complete genomeputative membrane fusion protein of T1SS5e-26119
NC_016147:2266419:2274851227485122762751425Pseudoxanthomonas spadix BD-a59 chromosome, complete genomemembrane-fusion protein7e-26118
NC_007949:9839:2214222142231911050Polaromonas sp. JS666 plasmid 1, complete sequencesecretion protein HlyD7e-26118
NC_010067:191190:2170292170292182191191Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-25117
NC_014844:1634985:1638056163805616394801425Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometype I secretion membrane fusion protein, HlyD family4e-25116
NC_011138:3182807:3186481318648131878481368Alteromonas macleodii 'Deep ecotype', complete genomeHlyD family secretion protein6e-25115
NC_005085:1870890:1879136187913618802841149Chromobacterium violaceum ATCC 12472, complete genomesecretion protein7e-25115
NC_011083:2847318:2850885285088528520751191Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type I secretion membrane fusion protein, HlyD family1e-24114
NC_006905:2857699:2859860285986028610501191Salmonella enterica subsp. enterica serovar Choleraesuis strputative HlyD family secretion protein1e-24114
NC_012125:2826624:2841730284173028429201191Salmonella enterica subsp. enterica serovar Paratyphi C straintype I secretion protein1e-24114
NC_016863:2844883:2844883284488328460461164Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1HlyD family secretion protein4e-24113
NC_016856:2896630:2896630289663028977931164Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SHlyD family secretion protein4e-24113
NC_004431:324000:3395113395113407731263Escherichia coli CFT073, complete genomePutative membrane spanning export protein4e-24112
NC_011094:2791719:2795286279528627964761191Salmonella enterica subsp. enterica serovar Schwarzengrund strtype I secretion membrane fusion protein, HlyD family protein5e-24112
NC_014117:2684631:2690239269023926914831245Burkholderia sp. CCGE1002 chromosome chromosome 1, completetype I secretion membrane fusion protein, HlyD family1e-23111
NC_006138:2397652:2421156242115624224451290Desulfotalea psychrophila LSv54, complete genomesimilar to secretion proteins1e-23110
NC_020209:5077410:5095119509511950964951377Pseudomonas poae RE*1-1-14, complete genomeType I secretion membrane fusion protein, HlyD9e-23108
NC_004556:1641985:1647876164787616492971422Xylella fastidiosa Temecula1, complete genomehemolysin secretion protein D5e-22106
NC_004463:6924150:6922739692273969242801542Bradyrhizobium japonicum USDA 110, complete genomeprobable Hemolysin secretion protein D4e-22106
NC_013889:1382705:1401521140152114029451425Thioalkalivibrio sp. K90mix chromosome, complete genometype I secretion membrane fusion protein, HlyD family4e-22106
NC_009076:2027478:2045412204541220468211410Burkholderia pseudomallei 1106a chromosome I, complete sequenceHlyD family secretion protein2e-21103
NC_006350:1938631:1938631193863119400461416Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative toxin-related secretion protein4e-21102
NC_007434:2424884:2444512244451224459271416Burkholderia pseudomallei 1710b chromosome I, complete sequenceHlyD family secretion protein4e-21102
NC_006350:1909639:1938631193863119400461416Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative toxin-related secretion protein4e-21102
NC_020829:2022000:2031456203145620328711416Pseudomonas denitrificans ATCC 13867, complete genomeHlyD family secretion protein9e-21101
NC_020064:2299950:2305668230566823069961329Serratia marcescens FGI94, complete genometype I secretion membrane fusion protein, HlyD family2e-20100
NC_014012:3812754:3824021382402138254421422Shewanella violacea DSS12, complete genomeHlyD family secretion protein1e-1998.2
NC_010338:4530403:4528997452899745304061410Caulobacter sp. K31, complete genometype I secretion membrane fusion protein, HlyD family3e-1996.7
NC_014166:1478469:1508985150898515101511167Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesecretion protein HlyD family protein1e-1895.1
NC_015856:3170771:3183539318353931849811443Collimonas fungivorans Ter331 chromosome, complete genomeputative HlyD family secretion protein3e-1893.6
NC_014393:3494863:3496289349628934975631275Clostridium cellulovorans 743B chromosome, complete genomesecretion protein HlyD family protein2e-1790.9
NC_014931:5470242:5480046548004654812151170Variovorax paradoxus EPS chromosome, complete genometype I secretion membrane fusion protein, HlyD family2e-1790.5
NC_015856:2146713:2170136217013621715151380Collimonas fungivorans Ter331 chromosome, complete genometype I secretion membrane fusion protein, HlyD9e-1788.6
NC_005773:951744:9603919603919617431353Pseudomonas syringae pv. phaseolicola 1448A, complete genometype I secretion membrane fusion protein, HlyD family2e-1687.4
NC_008319:1081614:1096473109647310980081536Synechococcus sp. CC9311, complete genomeHlyD family secretion protein domain protein2e-1687.4
NC_014366:2904500:2918387291838729197421356Gamma proteobacterium HdN1, complete genomeType I secretion membrane fusion protein (Hemolysin secretion protein D)5e-1686.3
NC_014355:3435343:3449865344986534512561392Candidatus Nitrospira defluvii, complete genomeputative type I secretion membrane fusion protein HlyD4e-1686.3
NC_017517:1807072:1808544180854418099711428Neisseria meningitidis M01-240355 chromosome, complete genomeHlyD family type I secretion membrane fusion protein6e-1685.9
NC_014837:1570500:1590312159031215915441233Pantoea sp. At-9b chromosome, complete genomeHlyD family type I secretion membrane fusion protein1e-1584.7
NC_004347:4302768:4308263430826343095881326Shewanella oneidensis MR-1, complete genomeHlyD family secretion protein1e-1584.7
NC_017505:1783476:1784948178494817863751428Neisseria meningitidis alpha710 chromosome, complete genomeputative periplasmic type I secretion system protein2e-1584.3
NC_008314:2611873:2613152261315226144891338Ralstonia eutropha H16 chromosome 2, complete sequenceRTX toxin membrane fusion protein2e-1584.3
NC_014012:1097938:1100244110024411016531410Shewanella violacea DSS12, complete genomeHlyD family secretion protein2e-1584
NC_012751:275336:2774522774522788281377Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeputative ABC associated RTX toxin transporter, HlyD/MFP family5e-1582.8
NC_009254:637952:6399486399486413661419Burkholderia vietnamiensis G4 chromosome 3, complete sequenceHlyD family type I secretion membrane fusion protein5e-1582.8
NC_008435:1215437:1231399123139912328351437Rhodopseudomonas palustris BisA53, complete genometype I secretion membrane fusion protein, HlyD family8e-1582
NC_015761:4098481:4109013410901341102901278Salmonella bongori NCTC 12419, complete genometype-I secretion protein8e-1582
NC_014394:1554373:1572230157223015736541425Gallionella capsiferriformans ES-2 chromosome, complete genometype I secretion membrane fusion protein, HlyD family1e-1481.6
NC_005126:3630459:3666606366660636679941389Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1481.3
NC_010067:3310336:3345938334593833472151278Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1479.7
NC_011566:1016858:1024295102429510257041410Shewanella piezotolerans WP3, complete genomeType I secretion membrane fusion protein, HlyD4e-1479.7
NC_009784:1591851:1611002161100216123751374Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein1e-1378.2
NC_017082:6444522:6468731646873164698911161Bradyrhizobium sp. S23321, complete genomehemolysin secretion protein D3e-1377
NC_015138:2270181:2276522227652222780421521Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetype I secretion membrane fusion protein, HlyD family2e-1377
NC_017046:4490500:4501160450116045024101251Salmonella enterica subsp. enterica serovar Typhimurium str. 798type-I secretion protein6e-1375.9
NC_016860:4575772:4586296458629645875461251Salmonella enterica subsp. enterica serovar Typhimurium strputative type I secretion protein6e-1375.9
NC_016831:4286000:4296686429668642979361251Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type-I secretion protein6e-1375.9
NC_012125:4400636:4411159441115944124091251Salmonella enterica subsp. enterica serovar Paratyphi C straintype-I secretion protein6e-1375.9
NC_011080:4461851:4472375447237544736251251Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein6e-1375.9
NC_010102:4396500:4407163440716344084131251Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1375.9
NC_011149:4390315:4400837440083744020871251Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein6e-1375.9
NC_011083:4466634:4477158447715844784081251Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein6e-1375.9
NC_003197:4470683:4481180448118044824571278Salmonella typhimurium LT2, complete genomepredicted cation efflux pump6e-1375.9
NC_006905:4405301:4415797441579744170741278Salmonella enterica subsp. enterica serovar Choleraesuis strmembrane permease, predicted cation efflux pump6e-1375.9
NC_016863:4431831:4442328444232844436051278Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1cation efflux pump6e-1375.9
NC_016857:4491976:4502473450247345037501278Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74cation efflux pump6e-1375.9
NC_016856:4482845:4494722449472244959991278Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Scation efflux pump6e-1375.9
NC_016810:4491975:4502472450247245037491278Salmonella enterica subsp. enterica serovar Typhimurium strputative type-I secretion protein6e-1375.9
NC_011294:4327904:4338401433840143396781278Salmonella enterica subsp. enterica serovar Enteritidis strtype-I secretion protein6e-1375.9
NC_011274:4305812:4316309431630943175861278Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type-I secretion protein6e-1375.9
NC_011147:4221000:4231787423178742330641278Salmonella enterica subsp. enterica serovar Paratyphi A strtype-I secretion protein6e-1375.9
NC_006511:4225455:4236100423610042373771278Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type-I secretion protein6e-1375.9
NC_013416:1748848:1753967175396717554001434Aggregatibacter actinomycetemcomitans D11S-1, complete genomehemolysin D7e-1375.5
NC_016832:4288980:4299504429950443007541251Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cation efflux pump7e-1375.5
NC_003198:4315807:4326304432630443275811278Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type-I secretion protein7e-1375.5
NC_004631:4300457:4310954431095443122311278Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative type-I secretion protein7e-1375.5
NC_009445:7324977:7341362734136273427381377Bradyrhizobium sp. ORS 278 chromosome, complete genomeHlyD family secretion protein9e-1375.1
NC_011205:4486142:4496666449666644979161251Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-1274.3
NC_016513:2103958:2108061210806121094941434Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehemolysin D2e-1274.3
NC_009445:6424000:6437645643764564390541410Bradyrhizobium sp. ORS 278 chromosome, complete genomeHlyD family secretion protein2e-1274.3
NC_007604:1145373:1151670115167011533731704Synechococcus elongatus PCC 7942, complete genomehypothetical protein5e-1272.8
NC_006576:456569:4674314674314691341704Synechococcus elongatus PCC 6301, complete genomehypothetical protein5e-1272.8
NC_004431:3409389:3424183342418334256191437Escherichia coli CFT073, complete genomeHemolysin D8e-1272
NC_007946:4779745:4821373482137348228091437Escherichia coli UTI89, complete genomehemolysin D8e-1272
NC_014006:3124818:3149328314932831507191392Sphingobium japonicum UT26S chromosome 1, complete genomeHlyD-family secretion protein2e-1171.2
NC_008253:4735418:4759981475998147614171437Escherichia coli 536, complete genomehemolysin D3e-1170.1
NC_015677:2939301:2953066295306629544301365Ramlibacter tataouinensis TTB310 chromosome, complete genomeCyaD protein8e-1168.9
NC_005126:1549066:1549066154906615504211356Photorhabdus luminescens subsp. laumondii TTO1, complete genomeRTX toxin ABC transporter protein (MFP) RtxD8e-1168.6
NC_010278:1467146:1474432147443214758651434Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,RTX-III toxin determinant D8e-1065.5
NC_012779:2064582:2078636207863620799731338Edwardsiella ictaluri 93-146, complete genometype I secretion membrane fusion protein, HlyD family2e-0964.3
NC_007604:1967770:1978129197812919794541326Synechococcus elongatus PCC 7942, complete genomehemolysin secretion protein-like9e-0962
NC_006576:2328427:2337595233759523389201326Synechococcus elongatus PCC 6301, complete genomesimilar to hemolysin secretion protein9e-0962
NC_003272:3237643:3242898324289832444211524Nostoc sp. PCC 7120, complete genomehypothetical protein1e-0861.6
NC_011365:1596652:1604139160413916056051467Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeHlyD family type I secretion membrane fusion protein7e-0755.8
NC_012912:1229333:123955012395501240374825Dickeya zeae Ech1591, complete genomebiotin/lipoyl attachment domain-containing protein3e-0653.5
NC_010505:4820000:4843996484399648453541359Methylobacterium radiotolerans JCM 2831, complete genomepolysaccharide export protein6e-0652.4