Pre_GI: BLASTP Hits

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Query: NC_004463:5110709:5124339 Bradyrhizobium japonicum USDA 110, complete genome

Start: 5124339, End: 5126420, Length: 2082

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017082:3687638:3687638368763836895331896Bradyrhizobium sp. S23321, complete genometwo-component sensor histidine kinase2e-154546
NC_010676:2975572:2991930299193029939061977Burkholderia phytofirmans PsJN chromosome 2, complete sequenceintegral membrane sensor signal transduction histidine kinase1e-44181
NC_018645:4879931:4900050490005049038533804Desulfobacula toluolica Tol2, complete genometwo component system sensor histidine kinase, hybrid9e-29129
NC_015723:280368:3037783037783092855508Cupriavidus necator N-1 chromosome 2, complete sequencenodulation protein NodV1e-24115
NC_014118:1528851:1545619154561915511175499Burkholderia sp. CCGE1002 chromosome chromosome 2, completemulti-sensor signal transduction multi-kinase4e-22107
NC_015675:4526500:4538364453836445414443081Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction histidine kinase5e-21103
NC_015675:4493758:4512888451288845184165529Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction multi-kinase2e-20101
NC_015675:4565500:4570189457018945721051917Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction histidine kinase2e-20101
NC_004463:1872537:1879666187966618823352670Bradyrhizobium japonicum USDA 110, complete genometwo component regulator6e-2099.8
NC_017249:8358438:8372414837241483748162403Bradyrhizobium japonicum USDA 6, complete genometwo component regulator8e-2099.4
NC_007973:1821753:183937818393781840331954Ralstonia metallidurans CH34 chromosome 1, complete sequencehistidine kinase5e-1996.7
NC_011002:772243:7722437722437741411899Burkholderia cenocepacia J2315 chromosome 3, complete sequencetwo-component regulatory system, sensor kinase protein6e-1996.3
NC_015727:1294532:1294532129453212975703039Cupriavidus necator N-1 plasmid BB1p, complete sequencenodulation protein NodV1e-1895.9
NC_007492:6372900:6398433639843363999801548Pseudomonas fluorescens PfO-1, complete genomePAS/PAC Sensor Signal Transduction Histidine Kinase2e-1895.1
NC_009485:7827782:7833542783354278347621221Bradyrhizobium sp. BTAi1 chromosome, complete genomesensor histidine kinase with ATP-binding region1e-1792.4
NC_010515:2111691:2165260216526021671581899Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePAS/PAC sensor signal transduction histidine kinase2e-1791.3
NC_008061:190287:2409422409422428401899Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencemulti-sensor signal transduction histidine kinase2e-1791.3
NC_008543:2220698:2236829223682922387271899Burkholderia cenocepacia HI2424 chromosome 2, complete sequencemulti-sensor signal transduction histidine kinase2e-1791.3
NC_015675:4526500:4532750453275045363103561Mesorhizobium opportunistum WSM2075 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase9e-1789.4
NC_002947:5961096:5979347597934759843955049Pseudomonas putida KT2440, complete genomesensor histidine kinase/GAF domain protein1e-1689
NC_014844:3582677:3597503359750335995692067Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeATPase ATP-binding domain-containing protein1e-1689
NC_012483:483425:4969904969904998002811Acidobacterium capsulatum ATCC 51196, complete genomesensory box sensor histidine kinase8e-1686.3
NC_009512:3251545:3261579326157932645152937Pseudomonas putida F1, complete genomemulti-sensor signal transduction histidine kinase1e-1585.9
NC_008825:846916:8525408525408554672928Methylibium petroleiphilum PM1, complete genomeosmosensitive K+ channel histidine kinase-like protein1e-1585.5
NC_014217:1352777:1364021136402113662822262Starkeya novella DSM 506 chromosome, complete genomemulti-sensor signal transduction histidine kinase2e-1584.7
NC_015416:2864917:2864917286491728677782862Methanosaeta concilii GP-6 chromosome, complete genomepentapeptide repeat-containing protein2e-1584.7
NC_010814:3332088:3332088333208833347842697Geobacter lovleyi SZ, complete genomemulti-sensor hybrid histidine kinase2e-1584.7
NC_011769:2248902:2272085227208522756603576Desulfovibrio vulgaris str. 'Miyazaki F', complete genomemulti-sensor hybrid histidine kinase8e-1582.8
NC_014118:2369669:2386536238653623921095574Burkholderia sp. CCGE1002 chromosome chromosome 2, completemulti-sensor signal transduction multi-kinase3e-1480.9
NC_017192:88940:1061581061581083502193Arcobacter sp. L, complete genometwo-component sensor kinase6e-1479.7
NC_014206:2941575:2952401295240129540411641Geobacillus sp. C56-T3 chromosome, complete genomeGAF sensor signal transduction histidine kinase3e-1377.8
NC_011992:3752867:3761753376175337628261074Acidovorax ebreus TPSY, complete genomehistidine kinase4e-1377.4
NC_006510:746814:7550037550037566431641Geobacillus kaustophilus HTA426, complete genomehypothetical protein7e-1376.3
NC_016593:762216:7703257703257719651641Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeGAF sensor signal transduction histidine kinase7e-1376.3
NC_017249:263873:2751592751592777052547Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein9e-1375.9
NC_016024:1472421:1472421147242114753782958Candidatus Chloracidobacterium thermophilum B chromosome chromosomePAS domain S-box protein1e-1275.5
NC_008825:2700617:270608327060832706760678Methylibium petroleiphilum PM1, complete genometwo-component hybrid sensor and regulator1e-1275.5
NC_007626:3522265:3567747356774735694381692Magnetospirillum magneticum AMB-1, complete genomeSignal transduction histidine kinase2e-1275.1
NC_014972:480355:4906254906254917551131Desulfobulbus propionicus DSM 2032 chromosome, complete genomehistidine kinase2e-1275.1
NC_014314:238043:2791912791912807111521Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completePAS/PAC sensor signal transduction histidine kinase2e-1274.7
NC_007498:1072112:1091829109182910950203192Pelobacter carbinolicus DSM 2380, complete genomesensory box/FOG: EAL domain/GGDEF domain containing protein5e-1273.6
NC_005139:2201820:2242723224272322446331911Vibrio vulnificus YJ016 chromosome I, complete sequenceputative tetrathionate reductase complex, sensory transduction histidine kinase9e-1272.8
NC_021184:3571014:3594465359446535960631599Desulfotomaculum gibsoniae DSM 7213, complete genomehistidine kinase,PAS domain-containing protein,histidine kinase,GAF domain-containing protein2e-1171.6
NC_012881:2405414:2405414240541424069101497Desulfovibrio salexigens DSM 2638, complete genomePAS/PAC sensor signal transduction histidine kinase2e-1171.6
NC_016616:2644883:2660948266094826626691722Dechlorosoma suillum PS chromosome, complete genomehistidine kinase3e-1170.9
NC_010524:4788753:4790987479098747925311545Leptothrix cholodnii SP-6, complete genomehistidine kinase5e-1170.1
NC_014972:2659388:2703629270362927054671839Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase8e-1169.3
NC_010511:6711836:6716700671670067182411542Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase2e-1068.2
NC_016803:198178:1995781995782019742397Desulfovibrio desulfuricans ND132 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1068.2
NC_015565:1281397:1282736128273612842921557Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeintegral membrane sensor signal transduction histidine kinase2e-1068.2
NC_010505:400950:4025894025894044511863Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor signal transduction histidine kinase3e-1067.4
NC_015379:4249238:4252274425227442533171044Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Histidine kinase, Classic1e-0965.5
NC_016815:844350:8443508443508461761827Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceputative two-component sensor histidine kinase protein1e-0965.5
NC_003228:2170963:2185269218526921871821914Bacteroides fragilis NCTC 9343, complete genomeputative two-component histidine sensor kinase1e-0965.5
NC_016830:2642881:2662910266291026639681059Pseudomonas fluorescens F113 chromosome, complete genomeSensor histidine kinase1e-0965.5
NC_016776:2161716:2177085217708521790041920Bacteroides fragilis 638R, complete genomeputative two-component histidine sensor kinase2e-0965.1
NC_013222:1659619:1660944166094416620381095Robiginitalea biformata HTCC2501, complete genomesensor histidine kinase2e-0965.1
NC_006138:2341975:2345844234584423476191776Desulfotalea psychrophila LSv54, complete genomehypothetical protein4e-0963.9
NC_002939:1021297:1036181103618110381481968Geobacter sulfurreducens PCA, complete genomesensor histidine kinase4e-0963.9
NC_020409:1407857:1440551144055114432172667Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Sensor histidine kinase response regulator4e-0963.9
NC_006347:2109192:2127576212757621294951920Bacteroides fragilis YCH46, complete genometwo-component system sensor histidine kinase9e-0962.8
NC_004347:4302768:4330014433001443318191806Shewanella oneidensis MR-1, complete genomesensor histidine kinase9e-0962.8
NC_014632:312000:3246353246353268632229Ilyobacter polytropus DSM 2926 chromosome, complete genomeintegral membrane sensor hybrid histidine kinase1e-0862.4
NC_014972:1982315:1998662199866220007762115Desulfobulbus propionicus DSM 2032 chromosome, complete genomesignal transduction histidine kinase, nitrogen specific, NtrB2e-0861.6
NC_019940:2731105:2731105273110527333392235Thioflavicoccus mobilis 8321 chromosome, complete genomePAS domain-containing protein2e-0861.6
NC_012881:2405414:2410254241025424120081755Desulfovibrio salexigens DSM 2638, complete genomehistidine kinase3e-0860.8
NC_007498:1072112:1076128107612810778731746Pelobacter carbinolicus DSM 2380, complete genomesensory box histidine kinase8e-0859.7
NC_008321:3189974:3202429320242932048012373Shewanella sp. MR-4, complete genomeperiplasmic sensor signal transduction histidine kinase1e-0759.3
NC_007946:3683371:3703026370302637044021377Escherichia coli UTI89, complete genomesensor protein ZraS1e-0758.9
NC_006513:1379735:1402776140277614044821707Azoarcus sp. EbN1, complete genometwo-component sensor2e-0758.2
NC_012918:2277500:2297983229798323000012019Geobacter sp. M21 chromosome, complete genomehistidine kinase3e-0757.8
NC_010511:1351000:1374953137495313768391887Methylobacterium sp. 4-46 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0757
NC_009483:2136424:2136424213642421389222499Geobacter uraniireducens Rf4 chromosome, complete genomemulti-sensor signal transduction histidine kinase4e-0757
NC_014364:2246524:2277833227783322795421710Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase6e-0756.6
NC_010546:4923496:1230812308136601353Cyanothece sp. ATCC 51142 chromosome circular, complete sequencetwo-component sensor histidine kinase9e-0756.2
NC_015572:2262374:2266870226687022686151746Methylomonas methanica MC09 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0655.8
NC_012108:1324885:1341364134136413425901227Desulfobacterium autotrophicum HRM2, complete genomeputative response regulator protein1e-0655.8
NC_014623:4535544:4551052455105245532982247Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein2e-0655.1
NC_010003:903433:9085859085859106422058Petrotoga mobilis SJ95, complete genomemetal dependent phosphohydrolase2e-0655.1
NC_009922:411434:4418564418564436701815Alkaliphilus oremlandii OhILAs, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0655.1
NC_014355:3248386:3248386324838632515623177Candidatus Nitrospira defluvii, complete genomeputative histidine kinase3e-0654.7
NC_021182:909090:9297909297909321922403Clostridium pasteurianum BC1, complete genomesignal transduction histidine kinase3e-0654.7
NC_020302:3014483:3029766302976630312681503Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein3e-0654.7
NC_017506:2089769:2110128211012821119721845Marinobacter adhaerens HP15 chromosome, complete genomesensor histidine kinase3e-0654.3
NC_011662:386162:4070404070404088991860Thauera sp. MZ1T, complete genomemulti-sensor signal transduction histidine kinase4e-0653.9
NC_014623:6509000:6509043650904365103711329Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein4e-0653.9
NC_014355:3435343:3456236345623634590102775Candidatus Nitrospira defluvii, complete genomeputative sensor histidine kinase5e-0653.5
NC_015276:1426000:1434519143451914362521734Marinomonas mediterranea MMB-1 chromosome, complete genomehistidine kinase5e-0653.5
NC_013890:808791:8152388152388190263789Dehalococcoides sp. GT chromosome, complete genomePAS/PAC sensor hybrid histidine kinase5e-0653.5
NC_012918:1660477:1683690168369016861222433Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase7e-0653.1
NC_013855:670285:6889726889726914702499Azospirillum sp. B510 plasmid pAB510a, complete sequencetwo-component sensor histidine kinase6e-0653.1
NC_017192:276187:2761872761872785562370Arcobacter sp. L, complete genometwo-component sensor kinase9e-0652.8
NC_014623:8648000:8664533866453386681713639Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein9e-0652.8
NC_007645:6049340:6053884605388460554911608Hahella chejuensis KCTC 2396, complete genomeSignal transduction histidine kinase9e-0652.8