Pre_GI: BLASTP Hits

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Query: NC_004463:5110709:5116345 Bradyrhizobium japonicum USDA 110, complete genome

Start: 5116345, End: 5116887, Length: 543

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:8401060:845029484502948450881588Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase5e-87319
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase5e-65246
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-24110
NC_010001:2125500:2128734212873421311752442Clostridium phytofermentans ISDg, complete genomeDNA ligase D2e-22105
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module4e-22104
NC_015675:4442000:446120844612084462071864Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP dependent DNA ligase5e-22103
NC_014923:3930669:394222939422293943092864Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase9e-22102
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D4e-21100
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D6e-21100
NC_002678:6608697:662255766225576623438882Mesorhizobium loti MAFF303099, complete genomesimilar to ATP-dependent DNA ligase1e-2099
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein2e-2099
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D1e-1995.9
NC_014923:4017575:402602940260294026889861Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase2e-1892
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase3e-1891.3
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D4e-1684.3
NC_008782:2683989:2685104268510426876172514Acidovorax sp. JS42, complete genomeDNA ligase (ATP)2e-1582
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase3e-1581.3
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein3e-1477.8
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB3e-1477.8
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase3e-1477.8
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase6e-1373.6
NC_005244:37546:532135321354172960Pseudomonas sp. ND6 plasmid pND6-1, complete sequenceATP-dependent DNA ligase6e-1373.6
NC_017955:3670670:3671121367112136721941074Modestobacter marinus, complete genomeATP-dependent DNA ligase6e-1373.6
NC_006322:1507411:150947515094751510284810Bacillus licheniformis ATCC 14580, complete genomeDNA ligase2e-1271.6
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase5e-1270.9
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein1e-1065.9
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein2e-1065.1
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase4e-1064.3
NC_011529:1375920:1390140139014013918281689Thermococcus onnurineus NA1, complete genomethermostable DNA ligase4e-0961.2
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase4e-0961.2
NC_011881:1:6008600870421035Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeATP dependent DNA ligase4e-0960.8
NC_013406:781308:791049791049791915867Paenibacillus sp. Y412MC10 chromosome, complete genomeATP-dependent DNA ligase1e-0859.7
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase1e-0859.3
NC_015416:2723189:274416427441642745111948Methanosaeta concilii GP-6 chromosome, complete genomeDNA polymerase LigD2e-0858.9
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent3e-0858.2
NC_014374:1072218:1177223117722311790461824Acidilobus saccharovorans 345-15 chromosome, complete genomeATP-dependent DNA ligase5e-0857.4
NC_000868:500249:5140035140035156821680Pyrococcus abyssi GE5, complete genomeDNA ligase6e-0857
NC_014222:186876:2024822024822042751794Methanococcus voltae A3 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl19e-0856.6
NC_014923:5721686:573584357358435736712870Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete2e-0755.5
NC_019973:5650646:566480356648035665672870Mesorhizobium australicum WSM2073, complete genome2e-0755.5
NC_015675:6276357:629051462905146291383870Mesorhizobium opportunistum WSM2075 chromosome, complete genome2e-0755.5
NC_009439:2427120:2427120242712024287781659Pseudomonas mendocina ymp, complete genomeATP-dependent DNA ligase3e-0755.1
NC_015723:1998363:1996693199669319983661674Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig3e-0754.7
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD4e-0754.3
NC_014376:1472304:151207015120701512993924Clostridium saccharolyticum WM1 chromosome, complete genomeATP dependent DNA ligase5e-0753.9
NC_017954:1:24924920511803Thermogladius cellulolyticus 1633 chromosome, complete genomeATP-dependent DNA ligase6e-0753.9
NC_009142:2692693:271027127102712710906636Saccharopolyspora erythraea NRRL 2338, complete genomeATP-dependent DNA ligase9e-0753.1
NC_003413:1521080:1525737152573715274221686Pyrococcus furiosus DSM 3638, complete genomeDNA ligase1e-0652.4
NC_008271:140846:140846140846141817972Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceATP-dependent DNA ligase2e-0652
NC_014830:3870000:3891964389196438933641401Intrasporangium calvum DSM 43043 chromosome, complete genomeATP dependent DNA ligase3e-0651.6
NC_013131:1593840:1622309162230916238921584Catenulispora acidiphila DSM 44928, complete genomeDNA ligase I, ATP-dependent Dnl14e-0651.2
NC_016645:1909507:1928088192808819297791692Pyrobaculum sp. 1860 chromosome, complete genomeDNA ligase6e-0650.4
NC_009952:2752500:2754445275444527560491605Dinoroseobacter shibae DFL 12, complete genomeDNA ligase8e-0650.1