Pre_GI: BLASTP Hits

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Query: NC_004463:2344128:2356412 Bradyrhizobium japonicum USDA 110, complete genome

Start: 2356412, End: 2357656, Length: 1245

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:7917586:7924527792452779257231197Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein0768
NC_004463:7683426:7696203769620376974081206Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-132472
NC_007925:3911323:3923391392339139246081218Rhodopseudomonas palustris BisB18, complete genomesignal transduction histidine kinase1e-124446
NC_010725:3961981:3974007397400739752271221Methylobacterium populi BJ001, complete genomesignal transduction histidine kinase3e-87322
NC_012988:1459961:1493218149321814944381221Methylobacterium extorquens DM4, complete genomesignal transduction histidine kinase6e-87321
NC_017249:2073558:2084025208402520852211197Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-38161
NC_017249:4365935:4384007438400743851761170Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-36152
NC_007498:357484:3768073768073805263720Pelobacter carbinolicus DSM 2380, complete genometwo component sensor histidine kinase7e-31135
NC_011894:6731115:6742313674231367445322220Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase1e-29130
NC_015676:1417456:1432257143225714352683012Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase8e-28125
NC_015574:1676798:1695092169509216971102019Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase3e-27123
NC_015676:1663700:1665586166558616672441659Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase9e-27121
NC_015216:405657:4241564241564258591704Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase2e-26120
NC_014408:1340016:1362183136218313641711989Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase6e-26118
NC_015216:1941000:1943517194351719451271611Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase8e-26118
NC_015574:1474967:1492207149220714946212415Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase2e-25116
NC_014550:2355500:2369888236988823713751488Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase8e-25115
NC_011884:2051723:2051723205172320545602838Cyanothece sp. PCC 7425, complete genomesignal transduction histidine kinase2e-24113
NC_015574:1970967:1987565198756519892231659Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase3e-24113
NC_011894:6793497:6807127680712768082901164Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase3e-24112
NC_013595:9149273:9168119916811991696121494Streptosporangium roseum DSM 43021, complete genomeputative signal transduction histidine kinase1e-23111
NC_009464:931647:9355969355969374461851Uncultured methanogenic archaeon RC-I, complete genomeputative signal transduction histidine kinase2e-23110
NC_009464:2881771:2892338289233828942661929Uncultured methanogenic archaeon RC-I, complete genomepredicted signal transduction histidine kinase2e-23110
NC_015676:109743:1466261466261492982673Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase8e-23108
NC_007355:2426000:2426018242601824297643747Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesignal-transducing histidine kinase2e-21103
NC_015321:4287945:4287945428794542889701026Fluviicola taffensis DSM 16823 chromosome, complete genomesignal transduction histidine kinase3e-21103
NC_014253:933261:9412849412849429961713Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase3e-21103
NC_014408:1193239:1194297119429711956791383Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase4e-21102
NC_014217:800406:8151018151018161531053Starkeya novella DSM 506 chromosome, complete genomesignal transduction histidine kinase7e-21102
NC_010168:1373337:1391491139149113929541464Renibacterium salmoninarum ATCC 33209 chromosome, complete genomesensory transduction protein kinase8e-21102
NC_008699:1816392:1816392181639218178671476Nocardioides sp. JS614, complete genomehistidine kinase, dimerisation/phosphoacceptor2e-20100
NC_009253:1381401:1383081138308113845591479Desulfotomaculum reducens MI-1 chromosome, complete genomesignal transduction histidine kinase4e-2099.4
NC_013521:940495:9578009578009592781479Sanguibacter keddieii DSM 10542, complete genomesignal transduction histidine kinase5e-2099.4
NC_014253:431942:4453354453354474642130Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase8e-2098.6
NC_015145:2693749:2730271273027127317371467Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomesignal transduction histidine kinase8e-2098.6
NC_014614:284005:2908202908202922381419Clostridium sticklandii, complete genomeSignal transduction histidine kinase1e-1997.8
NC_013192:63111:7418174181755841404Leptotrichia buccalis DSM 1135, complete genomesignal transduction histidine kinase6e-1995.9
NC_003901:2685716:2703485270348527070003516Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase9e-1995.1
NC_007355:2039435:2054203205420320570402838Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesensory transduction histidine kinase2e-1894
NC_003552:1492500:1510392151039215122421851Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase2e-1893.6
NC_014643:54500:6046160461620261566Rothia dentocariosa ATCC 17931 chromosome, complete genomesensor histidine kinase2e-1893.6
NC_013859:61586:8057180571817881218Azospirillum sp. B510 plasmid pAB510e, complete sequencetwo-component sensor histidine kinase3e-1893.6
NC_010338:1216385:123715012371501237872723Caulobacter sp. K31, complete genomesignal transduction histidine kinase3e-1893.2
NC_003552:1157294:1157294115729411597862493Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase4e-1892.8
NC_007355:970670:9875989875989903542757Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein5e-1892.8
NC_019940:1727384:1727384172738417329335550Thioflavicoccus mobilis 8321 chromosome, complete genomePAS domain-containing protein9e-1891.7
NC_015216:1941000:1945174194517419466731500Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase2e-1790.9
NC_002678:4618555:4620483462048346215141032Mesorhizobium loti MAFF303099, complete genometwo-component sensor protein2e-1790.5
NC_011757:5742290:5744893574489357459391047Methylobacterium chloromethanicum CM4, complete genomesignal transduction histidine kinase3e-1789.7
NC_004557:2289135:2304838230483823062861449Clostridium tetani E88, complete genomeethanolamine utilization sensory transduction histidine kinase4e-1789.7
NC_007722:851129:8623228623228634191098Erythrobacter litoralis HTCC2594, complete genomeputative signal transduction histidine kinase with GAF domain4e-1789.7
NC_016584:1998000:2018766201876620201871422Desulfosporosinus orientis DSM 765 chromosome, complete genomesignal transduction histidine kinase9e-1788.6
NC_017249:3229500:323225332322533233203951Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein9e-1788.6
NC_013517:1055854:1131726113172611331231398Sebaldella termitidis ATCC 33386, complete genomesignal transduction histidine kinase8e-1788.6
NC_018870:705900:7198827198827213511470Thermacetogenium phaeum DSM 12270 chromosome, complete genomesensor histidine kinase7e-1788.6
NC_008578:591357:5913575913575928291473Acidothermus cellulolyticus 11B, complete genomesignal transduction histidine kinase1e-1687.8
NC_020389:2288541:2315191231519123189703780Methanosarcina mazei Tuc01, complete genomehypothetical protein2e-1687.4
NC_005956:1572500:1588481158848115899381458Bartonella henselae str. Houston-1, complete genomehypothetical protein2e-1687.4
NC_005955:1284500:1301114130111413025711458Bartonella quintana str. Toulouse, complete genomehypothetical protein2e-1687
NC_003901:2685716:2711444271144427152233780Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase2e-1687
NC_003366:1091766:1097054109705410984811428Clostridium perfringens str. 13, complete genometwo-component sensor histidine kinase3e-1686.7
NC_008261:1048515:1053806105380610552331428Clostridium perfringens ATCC 13124, complete genomesensor histidine kinase3e-1686.7
NC_009633:286677:2918822918822932911410Alkaliphilus metalliredigens QYMF chromosome, complete genomesignal transduction histidine kinase4e-1686.3
NC_014019:3543389:3561801356180135632341434Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine two-component sensor histidine kinase4e-1686.3
NC_003901:3544712:3563665356366535662952631Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase4e-1686.3
NC_020389:2996978:3012499301249930151742676Methanosarcina mazei Tuc01, complete genomehypothetical protein4e-1686.3
NC_020389:1083517:1097343109734310983621020Methanosarcina mazei Tuc01, complete genomeSensory transduction histidine kinase7e-1685.5
NC_014364:2751662:276498727649872765835849Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase1e-1584.7
NC_003901:1268995:1285023128502312875182496Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase1e-1584.7
NC_017192:714346:7163637163637182341872Arcobacter sp. L, complete genometwo-component sensor kinase1e-1584.7
NC_014408:1193239:1193239119323911942971059Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase1e-1584.7
NC_017187:691769:6945016945016963541854Arcobacter butzleri ED-1, complete genometwo-component sensor kinase2e-1584.3
NC_012491:5914500:5934092593409259355521461Brevibacillus brevis NBRC 100599, complete genometwo-component sensor histidine kinase2e-1583.6
NC_014166:2055984:2073276207327620747121437Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesignal transduction histidine kinase2e-1583.6
NC_016109:5455060:5467591546759154691441554Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase4e-1582.8
NC_020301:1486695:1504171150417115056011431Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomesensor histidine kinase4e-1582.8
NC_020389:1730376:1730376173037617326882313Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase8e-1582
NC_012846:1888000:1902787190278719042411455Bartonella grahamii as4aup, complete genomesensor histidine kinase9e-1581.6
NC_011894:6516856:6541953654195365438601908Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase2e-1480.9
NC_017179:2067015:2072139207213920735481410Clostridium difficile BI1, complete genometwo-component sensor histidine kinase3e-1480.1
NC_013315:2059007:2064131206413120655401410Clostridium difficile CD196 chromosome, complete genometwo-component sensor histidine kinase3e-1480.1
NC_014364:2246524:2277833227783322795421710Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase3e-1479.7
NC_010161:2050816:2068528206852820699851458Bartonella tribocorum CIP 105476, complete genomehypothetical protein4e-1479.7
NC_008783:222000:2470612470612485031443Bartonella bacilliformis KC583, complete genomesensor histidine kinase4e-1479.7
NC_020300:1344453:1359142135914213605721431Bartonella australis Aust/NH1, complete genomesensor histidine kinase9e-1478.6
NC_003901:2685716:2707585270758527109083324Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase8e-1478.6
NC_015675:4565500:456654245665424567168627Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative signal transduction histidine kinase1e-1378.2
NC_010172:3712000:372793337279333728268336Methylobacterium extorquens PA1, complete genomesignal transduction histidine kinase1e-1377.8
NC_014932:1232346:1301168130116813025861419Bartonella clarridgeiae 73, complete genomehypothetical protein2e-1377.4
NC_003901:2906493:2906493290649329091502658Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase5e-1375.9
NC_017187:500638:5186495186495204451797Arcobacter butzleri ED-1, complete genometwo-component sensor kinase3e-1273.6
NC_020389:2288541:2311522231152223148033282Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase5e-1272.8
NC_011884:4366831:4366831436683143678621032Cyanothece sp. PCC 7425, complete genomesignal transduction histidine kinase5e-1272.8
NC_015177:2795487:2821576282157628235251950Pedobacter saltans DSM 12145 chromosome, complete genomesignal transduction histidine kinase5e-1272.4
NC_020389:2288541:230820923082092308730522Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase1e-1171.6
NC_015703:3746057:3759132375913237608591728Runella slithyformis DSM 19594 chromosome, complete genomesignal transduction histidine kinase4e-1169.7
NC_010511:6485500:6512616651261665136561041Methylobacterium sp. 4-46 chromosome, complete genomesignal transduction histidine kinase1e-1067.8
NC_010511:6067000:6143055614305561442241170Methylobacterium sp. 4-46 chromosome, complete genomesignal transduction histidine kinase3e-1067
NC_015732:3105649:311093531109353111342408Spirochaeta caldaria DSM 7334 chromosome, complete genomeputative signal transduction histidine kinase1e-0964.3
NC_010511:6067000:6125902612590261270741173Methylobacterium sp. 4-46 chromosome, complete genomesignal transduction histidine kinase2e-0964.3
NC_010505:5525461:5557838555783855595531716Methylobacterium radiotolerans JCM 2831, complete genomesignal transduction histidine kinase2e-0963.9
NC_014100:172452:1724521724521738851434Caulobacter segnis ATCC 21756 chromosome, complete genomesignal transduction histidine kinase7e-0858.9
NC_010511:6067000:6123549612354961253091761Methylobacterium sp. 4-46 chromosome, complete genomesignal transduction histidine kinase8e-0858.5
NC_012881:1062629:1076557107655710789652409Desulfovibrio salexigens DSM 2638, complete genomemulti-sensor hybrid histidine kinase1e-0757.8
NC_009089:428075:438435438435439349915Clostridium difficile 630, complete genometwo-component system, sensor histidine kinase1e-0757.8
NC_010511:6067000:6136435613643561379551521Methylobacterium sp. 4-46 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0757.8
NC_007958:830000:8322168322168336671452Rhodopseudomonas palustris BisB5, complete genomeHWE histidine kinase2e-0757
NC_019962:1750497:1860145186014518626882544Natrinema pellirubrum DSM 15624, complete genomePAS domain S-box3e-0756.6
NC_011757:1532047:1542105154210515435261422Methylobacterium chloromethanicum CM4, complete genomehistidine kinase3e-0756.6
NC_012988:1777618:1807240180724018086611422Methylobacterium extorquens DM4, complete genomeintegral membrane sensor signal transduction histidine kinase3e-0756.6
NC_014364:3238374:3239623323962332411881566Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase4e-0756.2
NC_014206:1497942:1507419150741915084381020Geobacillus sp. C56-T3 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase5e-0756.2
NC_013411:2951559:2967974296797429689931020Geobacillus sp. Y412MC61, complete genomePAS/PAC sensor signal transduction histidine kinase5e-0756.2
NC_003902:3514000:3520554352055435215641011Xanthomonas campestris pv. campestris str. ATCC 33913, completetwo-component system sensor protein5e-0756.2
NC_014915:2092678:2107905210790521089241020Geobacillus sp. Y412MC52 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase5e-0756.2
NC_006510:2110430:2127659212765921286811023Geobacillus kaustophilus HTA426, complete genometwo-component sensor histidine kinase1e-0654.7
NC_015320:160792:1662711662711683372067Archaeoglobus veneficus SNP6 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase2e-0654.3
NC_012796:2041579:2059849205984920624402592Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator3e-0653.5
NC_015732:3105649:3109591310959131109041314Spirochaeta caldaria DSM 7334 chromosome, complete genomeputative PAS/PAC sensor protein4e-0653.1
NC_013037:2043921:2064588206458820665821995Dyadobacter fermentans DSM 18053, complete genomehistidine kinase7e-0652.4
NC_012796:4693500:4714436471443647185634128Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator8e-0652
NC_015172:1161000:1169223116922311712502028Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase9e-0652