Pre_GI: BLASTP Hits

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Query: NC_004463:2344128:2345192 Bradyrhizobium japonicum USDA 110, complete genome

Start: 2345192, End: 2347084, Length: 1893

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:7917586:7935099793509979368981800Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein0957
NC_011894:3161289:3176689317668931785871899Methylobacterium nodulans ORS 2060, complete genomeTRAP C4-dicarboxylate transport system permease DctM subunit0773
NC_013855:558831:5716875716875735791893Azospirillum sp. B510 plasmid pAB510a, complete sequenceTRAP C4-dicarboxylate transport system permease DctM subunit0760
NC_017082:3717939:3719614371961437215091896Bradyrhizobium sp. S23321, complete genomeputative TRAP-type C4-dicarboxylate transport system0733
NC_010552:2454776:2471838247183824737481911Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctM subunit4e-179628
NC_014323:4355266:4370785437078543726681884Herbaspirillum seropedicae SmR1 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system dctQ-M fusion permease large permease1e-152540
NC_011892:352652:3636273636273655581932Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeTRAP dicarboxylate transporter, DctM subunit1e-71271
NC_021066:3028421:3046182304618230480561875Raoultella ornithinolytica B6, complete genomehypothetical protein1e-56221
NC_009832:110239:1300111300111318821872Serratia proteamaculans 568, complete genomeTRAP dicarboxylate transporter, DctM subunit9e-47188
NC_007644:416000:4272074272074284871281Moorella thermoacetica ATCC 39073, complete genomeTRAP dicarboxylate transporter- DctM subunit2e-42174
NC_007963:1190847:1213144121314412144241281Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctM subunit6e-42172
NC_016048:308342:3413263413263426121287Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter1e-41172
NC_015730:921735:9232579232579245611305Roseobacter litoralis Och 149 chromosome, complete genomeTRAP transporter subunit DctM4e-41169
NC_016048:3856665:3864869386486938661491281Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter1e-40168
NC_015589:2447132:2451124245112424524041281Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeTRAP dicarboxylate transporter DctM subunit7e-40166
NC_015519:1888917:1888917188891718902061290Tepidanaerobacter sp. Re1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM3e-39164
NC_015224:1914833:1919407191940719206991293Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative C4-dicarboxylate transporter, large subunit1e-39164
NC_007503:1111457:1160849116084911621261278Carboxydothermus hydrogenoformans Z-2901, complete genomeTRAP dicarboxylate transporter, DctM subunit3e-39163
NC_015573:162000:1738181738181750981281Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM4e-39163
NC_011992:1968258:1996155199615519974351281Acidovorax ebreus TPSY, complete genomeTRAP dicarboxylate transporter, DctM subunit5e-39163
NC_014206:1618988:1620632162063216219151284Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM5e-39162
NC_012108:946314:9669809669809682571278Desulfobacterium autotrophicum HRM2, complete genomeDctM25e-39162
NC_014624:2668157:2717023271702327183151293Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-38162
NC_015914:2230076:2252067225206722533411275Cyclobacterium marinum DSM 745 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM4e-38160
NC_006510:1995916:2016959201695920182421284Geobacillus kaustophilus HTA426, complete genometransporter4e-38160
NC_014532:2989185:3002435300243530037181284Halomonas elongata DSM 2581, complete genomeTRAP transporter large transmembrane protein4e-37156
NC_020911:3046916:3061821306182130631041284Octadecabacter antarcticus 307, complete genomeputative TRAP transporter large permease DctM subunit2e-36154
NC_010634:1916000:1951154195115419524461293Yersinia pseudotuberculosis PB1/+, complete genomeTRAP dicarboxylate transporter, DctM subunit2e-36154
NC_006155:1916426:1951170195117019524621293Yersinia pseudotuberculosis IP 32953, complete genomeTRAP-T family C4-dicarboxylate transporter, large (DctM) subunit2e-36154
NC_020908:1920169:1931692193169219329661275Octadecabacter arcticus 238, complete genomeTRAP transporter DctM subunit9e-36152
NC_015500:78223:1043021043021056001299Treponema brennaborense DSM 12168 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit2e-35150
NC_003911:1791878:1838069183806918393461278Silicibacter pomeroyi DSS-3, complete genomeTRAP dicarboxylate transporter, DctM subunit9e-35148
NC_016593:762216:7912007912007924771278Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeTRAP dicarboxylate transporter subunit DctM3e-34147
NC_015152:2887414:2898767289876729000351269Spirochaeta sp. Buddy chromosome, complete genomeTRAP dicarboxylate transporter DctM subunit3e-34147
NC_015458:1692401:1697018169701816983161299Pusillimonas sp. T7-7 chromosome, complete genomeputative inner membrane protein9e-34145
NC_011661:1807101:1807101180710118083841284Dictyoglomus turgidum DSM 6724, complete genomeTRAP dicarboxylate transporter, DctM subunit5e-33143
NC_017187:325229:3418083418083430881281Arcobacter butzleri ED-1, complete genomeC4-dicarboxylate transport protein4e-32140
NC_020210:661236:6747896747896760661278Geobacillus sp. GHH01, complete genomeTRAP dicarboxylate transporter DctM subunit8e-32139
NC_008751:607209:6283096283096302131905Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeTRAP dicarboxylate transporter, DctM subunit9e-32139
NC_014532:2664139:2676699267669926779671269Halomonas elongata DSM 2581, complete genomeTRAP transporter large transmembrane protein4e-31136
NC_019978:2532640:2544611254461125459001290Halobacteroides halobius DSM 5150, complete genomeTRAP transporter, DctM subunit6e-31136
NC_014011:1354261:1369461136946113707501290Aminobacterium colombiense DSM 12261 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit1e-30135
NC_009439:4404942:4425205442520544265001296Pseudomonas mendocina ymp, complete genomeTRAP dicarboxylate transporter, DctM subunit1e-30135
NC_014041:3197192:3201402320140232026911290Zunongwangia profunda SM-A87 chromosome, complete genomedctM-like transporter8e-31135
NC_016513:1761830:1770128177012817714291302Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeputative tRAP C4-dicarboxylate transport system permease DctM subunit1e-30134
NC_016048:3667890:3677840367784036791261287Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter4e-30133
NC_015565:1511426:1526543152654315278231281Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeTRAP dicarboxylate transporter subunit DctM4e-30133
NC_014011:1760793:1792999179299917942821284Aminobacterium colombiense DSM 12261 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit7e-30132
NC_009142:5647737:5647737564773756490411305Saccharopolyspora erythraea NRRL 2338, complete genomeC4-dicarboxylate transport system (permease large protein)2e-29130
NC_014219:999648:1022714102271410239851272Bacillus selenitireducens MLS10 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit4e-28127
NC_007963:2777066:2783855278385527851351281Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctM subunit3e-28127
NC_003454:1889529:1912010191201019132961287Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeC4-dicarboxylate transporter large subunit2e-28127
NC_009654:304000:3171453171453184221278Marinomonas sp. MWYL1, complete genomeTRAP dicarboxylate transporter, DctM subunit2e-28127
NC_013223:2609697:2636861263686126381651305Desulfohalobium retbaense DSM 5692, complete genomeTRAP dicarboxylate transporter, DctM subunit7e-28125
NC_008212:1386834:1410746141074614120441299Haloquadratum walsbyi DSM 16790, complete genomeTRAP-type C4-dicarboxylate transport system,large permease component DctM (YiaN)8e-28125
NC_004193:3530000:3540725354072535420321308Oceanobacillus iheyensis HTE831, complete genomeC4-dicarboxylate transport system permease large protein3e-27124
NC_004337:3590323:3726551372655137278431293Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-27124
NC_008209:695269:7138507138507151451296Roseobacter denitrificans OCh 114, complete genomeTRAP-type C4-dicarboxylate transport protein, permease component3e-26120
NC_009457:1444449:1480233148023314815161284Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein9e-26119
NC_012578:1838470:1874263187426318755461284Vibrio cholerae M66-2 chromosome I, complete sequenceSialic acid TRAP transporter,large permease9e-26119
NC_012668:1688500:1719095171909517203781284Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTRAP-type transport system large permease component9e-26119
NC_016445:1363831:1398530139853013998131284Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein9e-26119
NC_017270:1755552:1765881176588117671641284Vibrio cholerae LMA3984-4 chromosome chromosome I, completeTRAP-type transport system, large permease9e-26119
NC_013740:2218215:2230154223015422314521299Acidaminococcus fermentans DSM 20731, complete genomeTRAP dicarboxylate transporter, DctM subunit7e-25115
NC_007509:1043602:1047077104707710484291353Burkholderia sp. 383 chromosome 3, complete sequenceTRAP dicarboxylate transporter, DctM subunit3e-24114
NC_007963:3574000:3580097358009735813891293Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctM subunit2e-24114
NC_016642:1990684:2007838200783820091601323Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM4e-24113
NC_016901:3430401:3449243344924334506401398Shewanella baltica OS678 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM6e-24113
NC_009997:3483157:3502031350203135034281398Shewanella baltica OS195, complete genomeTRAP dicarboxylate transporter, DctM subunit6e-24113
NC_008392:666000:6847736847736861251353Burkholderia cepacia AMMD chromosome 3, complete sequenceTRAP dicarboxylate transporter, DctM subunit9e-24112
NC_016642:1913432:1934315193431519356101296Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM2e-23111
NC_007484:755058:7681097681097694371329Nitrosococcus oceani ATCC 19707, complete genomeTRAP dicarboxylate transporter, DctM subunit5e-23110
NC_009767:433432:4531524531524544861335Roseiflexus castenholzii DSM 13941, complete genomeTRAP dicarboxylate transporter, DctM subunit8e-23109
NC_014532:2298628:2308166230816623094641299Halomonas elongata DSM 2581, complete genomepossible integral membrane transport protein5e-23109
NC_007778:3784104:3806304380630438075961293Rhodopseudomonas palustris HaA2, complete genomeTRAP dicarboxylate transporter DctM subunit1e-22108
NC_008344:669498:6910706910706923531284Nitrosomonas eutropha C91, complete genomeTRAP dicarboxylate transporter, DctM subunit3e-22107
NC_008209:1385094:1400878140087814021941317Roseobacter denitrificans OCh 114, complete genomeTrapT family, DctM subunit, putative4e-22107
NC_013416:1429881:143615714361571437140984Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTRAP dicarboxylate transporter, DctM subunit5e-22106
NC_015458:2614108:2627049262704926283291281Pusillimonas sp. T7-7 chromosome, complete genomeintegral membrane protein7e-22106
NC_008820:2512518:2514204251420425155741371Prochlorococcus marinus str. MIT 9303, complete genomepossible Tripartite transporter component (TRAP-T family)7e-22105
NC_014010:484000:5067365067365080491314Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeTRAP dicarboxylate transporter- DctM subunit1e-20102
NC_020911:3159290:3159290315929031606181329Octadecabacter antarcticus 307, complete genomeTRAP transporter large permease subunit DctM2e-20101
NC_014166:1179335:1187599118759911888821284Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM7e-2099.4
NC_002927:506183:5492685492685505391272Bordetella bronchiseptica RB50, complete genomeintegral membrane protein1e-1998.6
NC_016629:3789554:3829995382999538313081314Desulfovibrio africanus str. Walvis Bay chromosome, completeTRAP dicarboxylate transporter subunit DctM2e-1998.2
NC_003911:3864852:3864852386485238661651314Silicibacter pomeroyi DSS-3, complete genomeTRAP dicarboxylate family transporter, DctM subunit2e-1997.8
NC_017223:51180:6558265582667751194Bordetella pertussis CS chromosome, complete genomeintegral membrane protein4e-1997.1
NC_002929:52500:6558265582667751194Bordetella pertussis Tohama I, complete genomeintegral membrane protein4e-1997.1
NC_009434:281474:2990762990763004521377Pseudomonas stutzeri A1501, complete genomeC4 dicarboxylate transporter permease9e-1995.9
NC_020302:85821:1312051312051325181314Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein4e-1893.6
NC_010506:4404377:4415275441527544166391365Shewanella woodyi ATCC 51908, complete genomeTRAP dicarboxylate transporter, DctM subunit5e-1893.2
NC_013166:194614:1974661974661988541389Kangiella koreensis DSM 16069, complete genomeTRAP dicarboxylate transporter, DctM subunit8e-1892.8
NC_007948:5026122:5027642502764250289641323Polaromonas sp. JS666, complete genomeTRAP dicarboxylate transporter- DctM subunit3e-1790.5
NC_008260:2442000:2453494245349424547741281Alcanivorax borkumensis SK2, complete genomeTRAP-type C4-dicarboxylate transport system,large permease component4e-1790.5
NC_009663:851143:8511438511438530141872Sulfurovum sp. NBC37-1, complete genomeC4-dicarboxylate transporter, permease7e-1789.7
NC_005296:2860000:2882000288200028833581359Rhodopseudomonas palustris CGA009, complete genomeTrapT family, dctM subunit, C4-dicarboxylate transport1e-1688.6
NC_016002:2534516:2554000255400025555081509Pseudogulbenkiania sp. NH8B, complete genomeTRAP dicarboxylate transporter subunit DctM3e-1687.8
NC_009952:592000:5978205978205991061287Dinoroseobacter shibae DFL 12, complete genomeTRAP dicarboxylate transporter7e-1686.3
NC_007802:2026500:2042505204250520438121308Jannaschia sp. CCS1, complete genomeTRAP dicarboxylate transporter- DctM subunit8e-1685.9
NC_007963:317291:3189413189413202631323Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctM subunit3e-1584.3
NC_016943:4194002:4234469423446942357641296Blastococcus saxobsidens DD2, complete genomeTRAP transporter subunit DctM5e-1583.6
NC_015497:2859724:2875982287598228772621281Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit6e-1583.2
NC_010506:2146444:2157756215775621590421287Shewanella woodyi ATCC 51908, complete genomeTRAP dicarboxylate transporter, DctM subunit8e-1582.8
NC_008254:3143770:3153601315360131548631263Mesorhizobium sp. BNC1, complete genomeTRAP C4-dicarboxylate transport system permease DctM subunit1e-1481.6
NC_007963:2777066:2790670279067027919861317Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctM subunit2e-1481.6
NC_006569:370846:3742383742383755031266Silicibacter pomeroyi DSS-3 megaplasmid, complete sequenceTRAP dicarboxylate transporter, DctM subunit2e-1481.6
NC_014011:472650:4915424915424928431302Aminobacterium colombiense DSM 12261 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit1e-1378.6
NC_015259:485015:5600805600805620982019Polymorphum gilvum SL003B-26A1 chromosome, complete genomehypothetical protein2e-1377.8
NC_020302:3014483:3031541303154130328511311Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein1e-1275.1
NC_018691:198909:2205252205252218321308Alcanivorax dieselolei B5 chromosome, complete genomePutative membrane protein (TrapT family, dctM subunit transport)3e-1273.9
NC_009342:2528426:2540410254041025417261317Corynebacterium glutamicum R chromosome, complete genomehypothetical protein5e-1273.6
NC_015276:1426000:1426551142655114278851335Marinomonas mediterranea MMB-1 chromosome, complete genomeTRAP dicarboxylate transporter, DctM subunit2e-1171.2
NC_016745:546249:5573915573915586801290Oceanimonas sp. GK1 chromosome, complete genomeTRAP C4-dicarboxylate transport system permease DctM3e-1170.5
NC_015859:1069116:1079432107943210807181287Corynebacterium variabile DSM 44702 chromosome, complete genomeTRAP dicarboxylate transporter subunit2e-1068.2
NC_011386:931140:9469529469529482591308Oligotropha carboxidovorans OM5, complete genometrap-type c4-dicarboxylate transport system3e-1067.8
NC_015684:3157941:3176197317619731775041308Oligotropha carboxidovorans OM5 chromosome, complete genomeTRAP transport system, large permease3e-1067.8
NC_018581:759932:7741617741617756781518Gordonia sp. KTR9 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system, large permease component1e-0965.9
NC_015578:3442866:3460190346019034620761887Treponema primitia ZAS-2 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM1e-0965.5
NC_008043:86470:1030161030161045211506Silicibacter sp. TM1040 mega plasmid, complete sequenceTRAP C4-dicarboxylate transport system permease DctM subunit2e-0965.1
NC_014532:2268078:2270444227044422717511308Halomonas elongata DSM 2581, complete genomeTRAP transporter large transmembrane protein5e-0963.5
NC_016943:4194002:4199365419936542006571293Blastococcus saxobsidens DD2, complete genomeTRAP dicarboxylate transporter-DctM subunit1e-0862.4
NC_007645:3688000:3689930368993036912521323Hahella chejuensis KCTC 2396, complete genomeTRAP-type mannitol/chloroaromatic compound transport system, large permease component2e-0861.6
NC_008596:3404832:3425722342572234270831362Mycobacterium smegmatis str. MC2 155, complete genomeTRAP transporter, DctM-like membrane protein6e-0860.1
NC_018643:1309804:1334962133496213363231362Alpha proteobacterium HIMB5 chromosome, complete genomeDctM family transporter6e-0859.7
NC_015573:813000:8418708418708431561287Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctM6e-0859.7
NC_013947:1696671:1713733171373317150701338Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeTRAP C4-dicarboxylate transport system permease DctM subunit6e-0756.6
NC_015276:3829059:3845176384517638478062631Marinomonas mediterranea MMB-1 chromosome, complete genomeTRAP transporter, 4TM/12TM fusion protein3e-0654.3
NC_014364:4488875:451039345103934510887495Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeTripartite ATP-independent periplasmic transporter DctQ component3e-0654.3
NC_015259:624979:6249796249796263971419Polymorphum gilvum SL003B-26A1 chromosome, complete genomeTRAP C4-dicarboxylate transport system permease DctM subunit5e-0653.1
NC_007802:3575739:3575739357573935771841446Jannaschia sp. CCS1, complete genomeTRAP C4-dicarboxylate transport system permease DctM subunit6e-0653.1