Pre_GI: BLASTP Hits

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Query: NC_004463:2344128:2344128 Bradyrhizobium japonicum USDA 110, complete genome

Start: 2344128, End: 2345195, Length: 1068

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:7917586:7936988793698879380131026Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein0701
NC_013855:558831:5737265737265747661041Azospirillum sp. B510 plasmid pAB510a, complete sequenceTRAP dicarboxylate transporter8e-141499
NC_010511:1351000:1355534135553413565561023Methylobacterium sp. 4-46 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP2e-127455
NC_011894:3161289:3178584317858431796031020Methylobacterium nodulans ORS 2060, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-112405
NC_014323:4355266:4372829437282943738631035Herbaspirillum seropedicae SmR1 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system periplasmic protein2e-105382
NC_017082:3717939:3721549372154937225801032Bradyrhizobium sp. S23321, complete genomeputative TRAP-type C4-dicarboxylate transport system3e-103375
NC_010552:2454776:2473745247374524747761032Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctP subunit1e-94347
NC_007503:1111457:1159123115912311601901068Carboxydothermus hydrogenoformans Z-2901, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-38160
NC_017187:325229:340255340255341247993Arcobacter butzleri ED-1, complete genomeC4-dicarboxylate-binding periplasmic protein6e-38158
NC_011892:352652:365576365576366562987Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeTRAP dicarboxylate transporter, DctP subunit1e-36154
NC_015914:2230076:225379622537962254788993Cyclobacterium marinum DSM 745 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-35150
NC_009050:604950:627975627975628964990Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctP subunit4e-35149
NC_015519:1888917:1890773189077318917981026Tepidanaerobacter sp. Re1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-34147
NC_020911:3046916:306024730602473061245999Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP3e-34146
NC_021066:3028421:3048132304813230491691038Raoultella ornithinolytica B6, complete genomehypothetical protein4e-34145
NC_019978:2532640:2546495254649525475501056Halobacteroides halobius DSM 5150, complete genometripartite ATP-independent periplasmic transporter solute receptor, DctP family6e-34145
NC_015458:1692401:169891516989151699898984Pusillimonas sp. T7-7 chromosome, complete genomeTRAP dicarboxylate transporter, DctP subunit7e-33141
NC_011992:1968258:1995100199510019961101011Acidovorax ebreus TPSY, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-32139
NC_016513:1761830:176842317684231769415993Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDctP protein4e-32139
NC_017270:1755552:176774417677441768709966Vibrio cholerae LMA3984-4 chromosome chromosome I, completeTRAP-type transport system, periplasmic protein2e-31137
NC_015145:92397:1200461200461210861041Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometripartite ATP-independent periplasmic transporter solute receptor, DctP family9e-32137
NC_016048:308342:3402363402363412941059Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter2e-31136
NC_006510:1995916:2015861201586120168891029Geobacillus kaustophilus HTA426, complete genomeC4-dicarboxylate transport system (C4-dicarboxylate-binding protein)3e-31136
NC_017188:419000:4363154363154373671053Bacillus amyloliquefaciens TA208 chromosome, complete genomeDctB6e-31135
NC_017190:424000:4410484410484421001053Bacillus amyloliquefaciens LL3 chromosome, complete genomeC4-dicarboxylate-binding protein6e-31135
NC_014206:1618988:1621954162195416230121059Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-31135
NC_006582:4256915:425691542569154257904990Bacillus clausii KSM-K16, complete genomeC4-dicarboxylate transport system substrate-binding protein3e-31135
NC_015565:1511426:1528392152839215294141023Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeTRAP dicarboxylate transporter subunit DctP9e-31134
NC_009457:1444449:148209614820961483061966Vibrio cholerae O395 chromosome 2, complete sequenceC4-dicarboxylate-binding periplasmic protein2e-30133
NC_012578:1838470:187612618761261877091966Vibrio cholerae M66-2 chromosome I, complete sequenceC4-dicarboxylate-binding periplasmic protein2e-30133
NC_012582:2013515:201351520135152014480966Vibrio cholerae O395 chromosome chromosome I, complete sequenceC4-dicarboxylate-binding periplasmic protein2e-30133
NC_012668:1688500:171755017175501718515966Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTRAP-type transport system periplasmic component2e-30133
NC_016445:1363831:140039314003931401358966Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeC4-dicarboxylate-binding periplasmic protein2e-30133
NC_016641:2815974:2835933283593328369671035Paenibacillus terrae HPL-003 chromosome, complete genomeputative C4-dicarboxylate ABC transporter substrate binding protein2e-30133
NC_017191:425000:4423454423454433971053Bacillus amyloliquefaciens XH7 chromosome, complete genomeC4-dicarboxylate binding protein3e-30132
NC_014966:1668822:169116016911601692143984Vibrio vulnificus MO6-24/O chromosome II, complete sequenceTRAP-type C4-dicarboxylate transporter periplasmic protein1e-29130
NC_009832:110239:1319071319071329201014Serratia proteamaculans 568, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-29129
NC_003911:1791878:1839928183992818409501023Silicibacter pomeroyi DSS-3, complete genomeTRAP dicarboxylate transporter, DctP subunit, putative5e-29129
NC_009778:4188000:422889942288994229882984Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-29128
NC_015589:2447132:2452948245294824539821035Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeTRAP dicarboxylate transporter DctP subunit5e-29128
NC_009454:1389974:1396060139606013970881029Pelotomaculum thermopropionicum SI, complete genomeTRAP-type C4-dicarboxylate transport system, periplasmic component2e-28127
NC_014206:1618988:1618988161898816200161029Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-28127
NC_014532:2989185:300087330008733001859987Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein2e-27123
NC_011661:1807101:180894618089461809941996Dictyoglomus turgidum DSM 6724, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-27123
NC_007963:2777066:2785741278574127867511011Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter, DctP subunit5e-27122
NC_011830:4951716:4951716495171649527471032Desulfitobacterium hafniense DCB-2, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-27122
NC_009439:4404942:4427124442712444281251002Pseudomonas mendocina ymp, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-27122
NC_014551:442135:459159459159459965807Bacillus amyloliquefaciens DSM 7, complete genomeC4-dicarboxylate-binding protein dctB Flags: Precursor3e-27122
NC_010634:1916000:195309619530961954088993Yersinia pseudotuberculosis PB1/+, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-26119
NC_006155:1916426:195311219531121954104993Yersinia pseudotuberculosis IP 32953, complete genomeTRAP-T family C4-dicarboxylate transporter, periplasmic binding protein (DctP subunit)3e-26119
NC_012491:1293086:1294546129454612955951050Brevibacillus brevis NBRC 100599, complete genomeprobable C4-dicarboxylate ABC transporter substrate binding protein6e-26118
NC_008392:666000:683207683207684193987Burkholderia cepacia AMMD chromosome 3, complete sequenceTRAP dicarboxylate transporter, DctP subunit2e-25116
NC_015224:1914833:192134819213481922325978Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative C4-dicarboxylate transporter,periplasmic protein2e-25116
NC_015152:2887414:2897742289774228987461005Spirochaeta sp. Buddy chromosome, complete genomeTRAP dicarboxylate transporter DctP subunit5e-25115
NC_007509:1043602:104900310490031049989987Burkholderia sp. 383 chromosome 3, complete sequenceTRAP dicarboxylate transporter- DctP subunit1e-24114
NC_016593:762216:7896097896097906491041Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeTRAP dicarboxylate transporter subunit DctP2e-24113
NC_013740:2218215:2228533222853322295461014Acidaminococcus fermentans DSM 20731, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-24113
NC_016048:3856665:3866163386616338672241062Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter5e-24112
NC_020210:661236:671267671267672223957Geobacillus sp. GHH01, complete genome2,3-diketo-L-gulonate-binding periplasmic protein3e-24112
NC_020908:1920169:193008319300831931063981Octadecabacter arcticus 238, complete genomeTRAP transporter DctP subunit3e-24112
NC_016048:3667890:3676205367620536772541050Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter7e-24111
NC_007778:3784104:380823938082393809237999Rhodopseudomonas palustris HaA2, complete genomeTRAP dicarboxylate transporter DctP subunit2e-23109
NC_014532:2664139:267512626751262676121996Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein3e-23109
NC_014041:3197192:320316532031653204151987Zunongwangia profunda SM-A87 chromosome, complete genomeputative dicarboxylate-binding periplasmic protein6e-23108
NC_008209:695269:715745715745716740996Roseobacter denitrificans OCh 114, complete genomeC4-dicarboxylate-binding protein, putative4e-23108
NC_007963:3574000:358199235819923582966975Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit4e-23108
NC_014364:4488875:4510905451090545119091005Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-22106
NC_007963:1190847:121161812116181212556939Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-22105
NC_014328:1263139:1264910126491012670722163Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative C4-dicarboxylate transporter protein/chemotaxis domain-containing protein2e-21103
NC_007644:416000:4256164256164266231008Moorella thermoacetica ATCC 39073, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-21102
NC_014011:1354261:1371285137128513723221038Aminobacterium colombiense DSM 12261 chromosome, complete genomeExtracellular solute-binding protein, family 72e-20100
NC_015573:162000:1721951721951732321038Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP2e-20100
NC_016642:1990684:200975720097572010731975Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP8e-2098.2
NC_020911:18500:362213622137201981Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP8e-2098.2
NC_013223:2609697:263872826387282639726999Desulfohalobium retbaense DSM 5692, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-1894.7
NC_009997:3483157:3500296350029635013151020Shewanella baltica OS195, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-1893.2
NC_016901:3430401:3447508344750834485271020Shewanella baltica OS678 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-1893.2
NC_014166:1179335:1189541118954111905541014Arcobacter nitrofigilis DSM 7299 chromosome, complete genomefamily 7 extracellular solute-binding protein3e-1789.7
NC_008260:2442000:2452364245236424533861023Alcanivorax borkumensis SK2, complete genomeTRAP dicarboxylate transporter, extracellular solute binding protein6e-1788.6
NC_014118:1592000:160360916036091604589981Burkholderia sp. CCGE1002 chromosome chromosome 2, completeExtracellular solute-binding protein, family 78e-1684.7
NC_004193:3530000:3539179353917935402011023Oceanobacillus iheyensis HTE831, complete genomeC4-dicarboxylate transport system C4-dicarboxylate-binding protein4e-1479.3
NC_015730:921735:921735921735922709975Roseobacter litoralis Och 149 chromosome, complete genomeputative TRAP transporter subunit DctP2e-1377.4
NC_008212:1386834:1412554141255414136781125Haloquadratum walsbyi DSM 16790, complete genomeTRAP-type C4-dicarboxylate transport system,periplasmic component DctP (YiaO)7e-1375.1
NC_009654:304000:3190013190013200141014Marinomonas sp. MWYL1, complete genomeTRAP dicarboxylate transporter- DctP subunit8e-1271.6
NC_007645:3688000:3688251368825136892671017Hahella chejuensis KCTC 2396, complete genomeTRAP-type mannitol/chloroaromatic compound transport system, periplasmic component3e-1066.6
NC_020302:85821:130112130112130642531Corynebacterium halotolerans YIM 70093 = DSM 44683, completeC4-dicarboxylate binding protein8e-1065.1
NC_016642:1913432:1936277193627719372961020Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-0964.3
NC_015573:813000:8433328433328443841053Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomefamily 7 extracellular solute-binding protein1e-0860.8
NC_015497:2859724:2874240287424028753161077Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeExtracellular solute-binding protein, family 72e-0860.1
NC_007969:1076287:1077587107758710786391053Psychrobacter cryohalolentis K5, complete genomeTRAP dicarboxylate transporter- DctP subunit3e-0859.7
NC_006569:370846:3762033762033772221020Silicibacter pomeroyi DSS-3 megaplasmid, complete sequenceTRAP dicarboxylate family transporter, DctP subunit1e-0758.2
NC_005296:2860000:2883903288390328849221020Rhodopseudomonas palustris CGA009, complete genomeTrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein8e-0755.1
NC_017223:51180:6748367483686641182Bordetella pertussis CS chromosome, complete genomehypothetical protein1e-0551.6
NC_002929:52500:6748367483686641182Bordetella pertussis Tohama I, complete genomehypothetical protein1e-0551.6