Pre_GI: BLASTP Hits

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Query: NC_004463:1772541:1775679 Bradyrhizobium japonicum USDA 110, complete genome

Start: 1775679, End: 1776635, Length: 957

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:2109843:2115945211594521169791035Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein2e-170598
NC_014834:614890:6204286204286214621035Rhodopseudomonas palustris DX-1 chromosome, complete genomeP-type conjugative transfer protein TrbG5e-167587
NC_014834:959986:983230983230984213984Rhodopseudomonas palustris DX-1 chromosome, complete genomeP-type conjugative transfer protein TrbG5e-106384
NC_009668:529175:5407885407885418161029Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceP-type conjugative transfer protein TrbG2e-102372
NC_008254:534590:555402555402556382981Mesorhizobium sp. BNC1, complete genomeConjugal transfer protein TrbG/VirB9/CagX4e-100364
NC_009485:8138314:814042581404258141321897Bradyrhizobium sp. BTAi1 chromosome, complete genomeconjugal transfer protein TrbG7e-100363
NC_010338:4148667:4154340415434041553651026Caulobacter sp. K31, complete genomeP-type conjugative transfer protein TrbG4e-95348
NC_009720:813157:8285818285818296061026Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG4e-95348
NC_014834:3472000:349982334998233500821999Rhodopseudomonas palustris DX-1 chromosome, complete genomeP-type conjugative transfer protein TrbG4e-95347
NC_009720:3210387:3211067321106732120921026Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG6e-95347
NC_009720:750612:7811697811697821851017Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG1e-94346
NC_007925:3911323:3926570392657039276101041Rhodopseudomonas palustris BisB18, complete genomeConjugal transfer protein TrbG/VirB9/CagX8e-92337
NC_009720:3317642:3334460333446033355031044Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG1e-91336
NC_009720:4406991:4421121442112144221731053Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG5e-91334
NC_009720:670853:6761866761866772381053Xanthobacter autotrophicus Py2, complete genomeP-type conjugative transfer protein TrbG7e-91333
NC_010725:3315007:3318188331818833192551068Methylobacterium populi BJ001, complete genomeP-type conjugative transfer protein TrbG1e-89329
NC_010125:1011430:102674910267491027735987Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein trbG5e-89327
NC_010125:2813653:2830891283089128318921002Gluconacetobacter diazotrophicus PAl 5, complete genomeputative type IV secretion system4e-82305
NC_015410:3209954:321276032127603213746987Pseudomonas mendocina NK-01 chromosome, complete genomeP-type conjugative transfer protein TrbG7e-75280
NC_018691:3082000:310550831055083106497990Alcanivorax dieselolei B5 chromosome, complete genomeTrbG-like protein9e-73273
NC_010002:2933909:2960330296033029613311002Delftia acidovorans SPH-1, complete genomeP-type conjugative transfer protein TrbG2e-70266
NC_008757:77023:7911079110801231014Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeConjugal transfer protein TrbG/VirB9/CagX7e-70264
NC_010170:4800000:488646948864694887434966Bordetella petrii, complete genomeconjugal transfer protein TrbG5e-69261
NC_011992:1381843:138394813839481384937990Acidovorax ebreus TPSY, complete genomeP-type conjugative transfer protein TrbG2e-68259
NC_015186:491930:493932493932494912981Acidiphilium multivorum AIU301, complete genomeP-type conjugative transfer protein TrbG4e-67254
NC_008577:1489643:150088215008821501874993Shewanella sp. ANA-3 chromosome 1, complete sequenceConjugal transfer protein TrbG/VirB9/CagX1e-66253
NC_009656:3817261:383390138339013834893993Pseudomonas aeruginosa PA7 chromosome, complete genomeconjugal transfer protein TrbG/VirB9/CagX2e-66252
NC_015422:1643000:165888916588891659872984Alicycliphilus denitrificans K601 chromosome, complete genomeP-type conjugative transfer protein TrbG4e-66251
NC_015381:2859000:287319428731942874192999Burkholderia gladioli BSR3 chromosome 1, complete sequenceP-type conjugative transfer protein TrbG5e-66251
NC_015593:2914384:291657229165722917555984Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeP-type conjugative transfer protein TrbG3e-64245
NC_014414:2569494:2568490256849025694971008Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein TrbG3e-63242
NC_015186:2839668:285655628565562857539984Acidiphilium multivorum AIU301, complete genomeconjugal transfer protein TrbG3e-59229
NC_014006:2932959:295309029530902953947858Sphingobium japonicum UT26S chromosome 1, complete genomeconjugal transfer protein TrbG3e-58225
NC_014500:894136:899163899163900098936Dickeya dadantii 3937 chromosome, complete genomeConjugative transfer protein TrbG3e-54212
NC_012912:1295653:131650213165021317383882Dickeya zeae Ech1591, complete genomeP-type conjugative transfer protein TrbG1e-53210
NC_013209:2582878:259083425908342591367534Acetobacter pasteurianus IFO 3283-01, complete genomeconjugal transfer protein TrbG6e-34144
NC_011666:1601983:1603188160318816042261039Methylocella silvestris BL2, complete genome4e-33142
NC_013422:1755875:1792655179265517936711017Halothiobacillus neapolitanus c2, complete genomeP-type conjugative transfer protein TrbG1e-28127
NC_013861:3341955:336314233631423364017876Legionella longbeachae NSW150, complete genomeConjugal transfer protein trbG precursor1e-27124
NC_008254:611437:614177614177614419243Mesorhizobium sp. BNC1, complete genome1e-27124
NC_006371:1743982:175494117549411755813873Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical TrbG protein2e-27123
NC_015385:1875671:1895462189546218965501089Treponema succinifaciens DSM 2489 chromosome, complete genomeConjugal transfer protein TrbG/VirB9/CagX3e-22105
NC_015386:107000:1176141176141186931080Treponema succinifaciens DSM 2489 plasmid pTRESU01, completeConjugal transfer protein TrbG/VirB9/CagX8e-1994.7
NC_012751:409333:420074420074420874801Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeVirB9 conjugative transfer protein8e-1684.7
NC_014914:127873:148697148697149509813Taylorella equigenitalis MCE9 chromosome, complete genomeConjugal transfer-like protein1e-1584.3
NC_015850:2048251:208620820862082087026819Acidithiobacillus caldus SM-1 chromosome, complete genomeconjugal transfer protein TrbG/VirB9/CagX3e-1582.8
NC_008781:2611702:264637926463792647161783Polaromonas naphthalenivorans CJ2, complete genomeConjugal transfer protein TrbG/VirB9/CagX7e-1478.2
NC_010170:3908500:392261839226183923505888Bordetella petrii, complete genometype IV secretion system protein VirB98e-1374.7
NC_016814:18000:369563695637765810Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceType IV secretion system protein virB9 Flags: Precursor2e-1273.6
NC_007950:206474:209012209012209818807Polaromonas sp. JS666 plasmid 2, complete sequenceConjugal transfer protein TrbG/VirB9/CagX3e-1272.8
NC_008786:4070753:408793540879354088753819Verminephrobacter eiseniae EF01-2, complete genomeConjugal transfer protein TrbG/VirB9/CagX9e-1271.2
NC_010515:1124298:113167011316701132494825Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceConjugal transfer protein TrbG/VirB9/CagX7e-1168.6
NC_009488:327285:332462332462333223762Orientia tsutsugamushi str. Boryong, complete genomeconjugal transfer protein1e-1067
NC_008061:2106848:211422021142202115044825Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceConjugal transfer protein TrbG/VirB9/CagX2e-1066.6
NC_011001:372185:386255386255387079825Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative type IV secretion system protein VirB94e-1065.9
NC_016929:825413:844094844094844846753Rickettsia canadensis str. CA410 chromosome, complete genomehypothetical protein2e-0963.2
NC_008757:111292:111292111292112134843Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeConjugal transfer protein TrbG/VirB9/CagX5e-0962
NC_009879:835227:853981853981854733753Rickettsia canadensis str. McKiel, complete genomehypothetical protein6e-0962
NC_009254:365812:371054371054371878825Burkholderia vietnamiensis G4 chromosome 3, complete sequenceconjugal transfer protein TrbG/VirB9/CagX1e-0757.8
NC_017271:2935643:297066429706642971437774Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirB91e-0653.9