Pre_GI: BLASTP Hits

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Query: NC_004463:1369165:1390940 Bradyrhizobium japonicum USDA 110, complete genome

Start: 1390940, End: 1391659, Length: 720

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator2e-78291
NC_008209:1385094:140394714039471404594648Roseobacter denitrificans OCh 114, complete genomeGntR-family transcription regulator, putative5e-22104
NC_009720:583060:586317586317586994678Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator4e-2098.2
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family2e-1789.4
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family2e-1582.8
NC_004557:2607073:262244126224412623106666Clostridium tetani E88, complete genometranscriptional regulator, gntR family4e-1581.6
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family6e-1581.3
NC_002578:1434396:144095614409561441609654Thermoplasma acidophilum DSM 1728, complete genomeNta operon transcriptional regulator related protein2e-1376.3
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family2e-1376.3
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family5e-1374.7
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-1273.6
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family1e-1273.2
NC_008595:312861:330795330795331451657Mycobacterium avium 104, complete genometranscriptional regulator, GntR family protein1e-1273.2
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator3e-1272
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family5e-1271.6
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family5e-1271.2
NC_007974:785216:805329805329806051723Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family7e-1270.9
NC_017986:4374979:438945543894554390258804Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator9e-1270.5
NC_009512:1691930:170640617064061707209804Pseudomonas putida F1, complete genometranscriptional regulator, GntR family9e-1270.5
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator1e-1170.1
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator1e-1170.1
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family2e-1169.7
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family2e-1169.7
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator2e-1169.7
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family6e-1167.8
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator6e-1167.8
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator7e-1167.8
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein1e-1067
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family2e-1066.2
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein2e-1065.9
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family3e-1065.5
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator4e-1065.1
NC_020829:809457:813097813097813771675Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator6e-1064.7
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family7e-1064.3
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator9e-1063.9
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator1e-0963.5
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator1e-0963.5
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator1e-0963.5
NC_014632:336000:336166336166336810645Ilyobacter polytropus DSM 2926 chromosome, complete genomeGntR family transcriptional regulator1e-0963.5
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family2e-0963.2
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR2e-0962.8
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator3e-0962.4
NC_009664:4423829:451763545176354518357723Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family6e-0961.2
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family7e-0960.8
NC_011601:2998326:302153730215373022199663Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator CsiR7e-0960.8
NC_011750:2928990:296321029632102963872663Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional regulator CsiR7e-0960.8
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family9e-0960.8
AP010958:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional dual regulator CsiR9e-0960.5
NC_010498:2847359:286928928692892869951663Escherichia coli SMS-3-5, complete genomegab operon transcriptional repressor CsiR9e-0960.5
AC_000091:2747520:279433027943302794992663Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional dual regulator9e-0960.5
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator9e-0960.5
NC_007384:2933625:295532129553212956001681Shigella sonnei Ss046, complete genomeputative transcriptional regulator9e-0960.5
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator1e-0860.5
NC_010473:2839902:288546128854612886123663Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional dual regulator9e-0960.5
CP002185:2919752:294178929417892942451663Escherichia coli W, complete genomeDNA-binding transcriptional dual regulator9e-0960.5
NC_000913:2746886:279369627936962794358663Escherichia coli K12, complete genomeDNA-binding transcriptional dual regulator9e-0960.5
NC_012759:2633949:267950826795082680170663Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional regulator CsiR9e-0960.5
NC_012967:2669182:269042726904272691089663Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional regulator CsiR9e-0960.5
NC_013353:3238742:325819932581993258861663Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional dual regulator CsiR9e-0960.5
NC_013361:3651150:367411436741143674776663Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator CsiR9e-0960.5
NC_013364:3339768:335928833592883359950663Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional dual regulator CsiR9e-0960.5
NC_016822:3065426:308750330875033088165663Shigella sonnei 53G, complete genomeDNA-binding transcriptional regulator CsiR9e-0960.5
CU928160:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional dual regulator1e-0860.1
NC_011741:2818750:284058328405832841245663Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional regulator CsiR1e-0860.1
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator1e-0860.1
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR2e-0859.7
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR2e-0859.7
NC_011742:2863316:288287128828712883533663Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional regulator CsiR2e-0859.3
NC_003305:1743939:177186217718621772575714Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family2e-0859.3
NC_004741:2741971:276286927628692763531663Shigella flexneri 2a str. 2457T, complete genomeputative transcriptional regulator2e-0859.3
NC_004337:2747917:276823327682332768895663Shigella flexneri 2a str. 301, complete genomeputative transcriptional regulator2e-0859.3
NC_017328:2785309:280711528071152807777663Shigella flexneri 2002017 chromosome, complete genomeputative transcriptional regulator2e-0859.3
NC_008563:2946391:296554229655422966222681Escherichia coli APEC O1, complete genomeputative transcriptional regulator YgaE3e-0858.9
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family3e-0858.9
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family3e-0858.9
NC_015379:4426827:443682144368214437543723Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, GntR family4e-0858.5
NC_017275:927814:944351944351944989639Sulfolobus islandicus HVE10/4 chromosome, complete genomeGntR family transcriptional regulator5e-0858.2
NC_002678:5060670:510937251093725110070699Mesorhizobium loti MAFF303099, complete genometranscription regulator7e-0857.4
NC_008254:2496622:250986125098612510598738Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family1e-0757
NC_012108:3824977:383239938323993833073675Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (GntR family protein)1e-0757
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family1e-0757
NC_019791:1272850:130005613000561300721666Caldisphaera lagunensis DSM 15908 chromosome, complete genometranscriptional regulator1e-0756.6
NC_010002:2293670:231700023170002317677678Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family1e-0756.6
NC_008268:4669530:469303346930334693788756Rhodococcus sp. RHA1, complete genometranscriptional regulator, GntR family3e-0755.8
NC_018644:1263891:127174812717481272407660Alpha proteobacterium HIMB59 chromosome, complete genometranscriptional regulator, gntR family,FCD domain-containing protein2e-0755.8
NC_013526:65495:890168901689705690Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family2e-0755.8
NC_015856:268034:267125267125268093969Collimonas fungivorans Ter331 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_020911:3046916:305943830594383060121684Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator3e-0755.5
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family4e-0755.1
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family4e-0755.1
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein5e-0755.1
NC_002754:1061851:108024710802471080885639Sulfolobus solfataricus P2, complete genomeTranscriptional regulator5e-0754.7
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator5e-0754.7
NC_003047:3360000:337337633733763374068693Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN7e-0754.3
NC_016825:158626:167712167712168413702Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12GntR family transcriptional regulator7e-0754.3
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator7e-0754.3
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator8e-0753.9
NC_013524:392089:401901401901402647747Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, GntR family9e-0753.9
AC_000091:1521976:152197615219761522641666Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-0653.1
NC_020911:3076791:308053030805303081186657Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator2e-0653.1
NC_010473:1607646:160888116088811609546666Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator2e-0653.1
NC_000913:1517051:151828615182861518951666Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator2e-0653.1
NC_012759:1409086:141034514103451411010666Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-0653.1
NC_010407:3132683:314793331479333148604672Clavibacter michiganensis subsp. sepedonicus chromosome, completeGntR family transcriptional regulator2e-0653.1
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family2e-0652.8
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family2e-0652.8
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family5e-0651.2
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family6e-0651.2
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family7e-0650.8
NC_015554:4002952:401532540153254016101777Alteromonas sp. SN2 chromosome, complete genomeGntR family transcriptional regulator8e-0650.8
NC_008392:666000:681288681288681968681Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, GntR family8e-0650.8