Pre_GI: BLASTP Hits

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Query: NC_004432:936500:942507 Mycoplasma penetrans HF-2, complete genome

Start: 942507, End: 943160, Length: 654

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006360:518808:520385520385521053669Mycoplasma hyopneumoniae 232, complete genomehexulose-6-phosphate synthase9e-78289
NC_014921:22828:298582985830511654Mycoplasma fermentans M64 chromosome, complete genome3-hexulose-6-phosphate synthase1e-77289
NC_013364:5083949:511058451105845111234651Escherichia coli O111:H- str. 11128, complete genome3-keto-L-gulonate-6-phosphate decarboxylase6e-58223
NC_006085:925604:957565957565958218654Propionibacterium acnes KPA171202, complete genomehexulose phosphate synthase3e-35148
NC_009648:3224495:324751032475103248145636Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative hexulose 6 phosphate synthase7e-1890.5
NC_011083:2847318:286819128681912868826636Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3-hexulose-6-phosphate synthase1e-1789.7
NC_016810:2871689:291625129162512916886636Salmonella enterica subsp. enterica serovar Typhimurium str3-hexulose-6-phosphate synthase1e-1789.7
NC_016856:2896630:291391029139102914545636Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative hexulose 6 phosphate synthase1e-1789.7
NC_016857:2871689:291625129162512916886636Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative hexulose 6 phosphate synthase1e-1789.7
NC_016863:2844883:286216328621632862798636Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative hexulose 6 phosphate synthase1e-1789.7
NC_017046:2896651:291499229149922915627636Salmonella enterica subsp. enterica serovar Typhimurium str. 7983-hexulose-6-phosphate synthase1e-1789.7
NC_011751:3048490:306777830677783068413636Escherichia coli UMN026 chromosome, complete genomeputative 3-hexulose-6-phosphate synthase from bacteriophage origin2e-1789.4
NC_009480:1261961:128670812867081287331624Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative hexulose-6-phosphate synthase4e-1478.2
NC_003413:214120:2354892354892367931305Pyrococcus furiosus DSM 3638, complete genomehexulose-6-phosphate synthase (d-arabino 3-hexulose 6-phosphate formaldehyde lyase)9e-1477
NC_007168:2415361:241748124174812418113633Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein2e-1375.9
NC_009712:669647:6707536707536720391287Candidatus Methanoregula boonei 6A8, complete genomebifunctional hexulose-6-phosphate synthase/ribonuclease regulator3e-1375.5
NC_013665:849508:8543158543158556011287Methanocella paludicola SANAE, complete genome3-hexulose-6-phosphate synthase4e-1374.7
NC_006624:405966:4068414068414080611221Thermococcus kodakarensis KOD1, complete genomebifunctional D-arabino 3-hexulose-6-phosphate formaldehyde lyase/phosphohexuloisomerase3e-1272
NC_017338:588983:607217607217607849633Staphylococcus aureus subsp. aureus JKD6159 chromosome, complete3-hexulose-6-phosphate synthase3e-1271.6
NC_002952:610462:629493629493630125633Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative hexulose-6-phosphate synthase4e-1271.2
NC_003923:591000:613401613401614033633Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein4e-1271.2
NC_002953:588437:612092612092612724633Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative hexulose-6-phosphate synthase4e-1271.2
NC_007622:567500:586936586936587568633Staphylococcus aureus RF122, complete genomeprobable 3-hexulose-6-phosphate synthase5e-1271.2
NC_017347:616000:638306638306638938633Staphylococcus aureus subsp. aureus T0131 chromosome, complete3-hexulose-6-phosphate synthase5e-1271.2
NC_017341:618649:642198642198642830633Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,3-hexulose-6-phosphate synthase5e-1271.2
NC_009641:597000:619249619249619881633Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein5e-1271.2
NC_020210:2133996:215551921555192156154636Geobacillus sp. GHH01, complete genome3-hexulose-6-phosphate synthase7e-1270.5
NC_012968:325529:343956343956344618663Methylotenera mobilis JLW8, complete genomeOrotidine 5'-phosphate decarboxylase3e-1065.5
NC_010556:2328303:233342623334262334064639Exiguobacterium sibiricum 255-15, complete genome3-hexulose-6-phosphate synthase2e-0962.4
NC_018665:2163713:217160321716032172241639Exiguobacterium antarcticum B7 chromosome, complete genome3-hexulose-6-phosphate synthase2e-0962.4
NC_009848:2335265:233803423380342338666633Bacillus pumilus SAFR-032, complete genome3-hexulose-6-phosphate synthase2e-0962.4
NC_010525:612000:632246632246632914669Thermoproteus neutrophilus V24Sta, complete genomeOrotidine 5'-phosphate decarboxylase8e-0960.5
NC_009376:1633283:164009216400921640757666Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeorotidine 5'-phosphate decarboxylase1e-0756.6
NC_007955:2074844:2095822209582220970121191Methanococcoides burtonii DSM 6242, complete genomeOrotidine 5'-phosphate decarboxylase5e-0754.7
NC_019977:253895:2548442548442560401197Methanomethylovorans hollandica DSM 15978, complete genomeformaldehyde-activating enzyme4e-0651.6
NC_019977:253895:2734122734122745631152Methanomethylovorans hollandica DSM 15978, complete genomeDemethylmenaquinone methyltransferase7e-0650.8