Pre_GI: BLASTP Hits

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Query: NC_004349:3938:3938 Shewanella oneidensis MR-1 plasmid pMR-1, complete sequence

Start: 3938, End: 5650, Length: 1713

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013926:1270173:1273330127333012763172988Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF4505e-1583.2
NC_009633:3055413:3097513309751330997592247Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein7e-1065.9
NC_011891:3369170:3379581337958133824332853Anaeromyxobacter dehalogenans 2CP-1, complete genomeprotein of unknown function DUF4501e-0655.5
NC_006513:1547092:1551214155121415528451632Azoarcus sp. EbN1, complete genomeType I site-specific deoxyribonuclease, methylase subunit2e-0654.3
NC_006347:3390193:3412654341265434164633810Bacteroides fragilis YCH46, complete genomeputative type IIS restriction/modification enzyme9e-1375.9
NC_014616:862084:8725788725788741701593Bifidobacterium bifidum S17 chromosome, complete genometype II methyltransferase1e-1275.5
NC_012225:1497934:1516857151685715198923036Brachyspira hyodysenteriae WA1, complete genomerestriction enzyme methylase subunit2e-1067.8
NC_012225:1497934:1508209150820915094951287Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-0654.3
NC_014150:2146887:2158447215844721596791233Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein2e-0654.3
NC_014150:2146887:2162432216243221639521521Brachyspira murdochii DSM 12563 chromosome, complete genome8e-0859.3
NC_014150:2146887:2150714215071421538903177Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF4502e-1068.2
NC_014330:609982:6197376197376224572721Brachyspira pilosicoli 95/1000 chromosome, complete genomefused endonuclease-methyltransferase1e-1378.6
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase4e-1686.7
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase2e-1687.4
NC_003912:30265:4469944699484723774Campylobacter jejuni RM1221, complete genometype II restriction-modification enzyme5e-1273.2
NC_008787:31999:5460554605583393735Campylobacter jejuni subsp. jejuni 81-176, complete genometype II restriction-modification enzyme7e-0859.3
NC_002163:29726:4899648996501561161Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative type IIS restriction /modification enzyme, C-terminal half4e-0860.1
NC_017281:30261:4469744697481193423Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative type IIS restriction /modification enzyme, N-terminal protein6e-0756.6
NC_012039:1399699:1399699139969914034693771Campylobacter lari RM2100, complete genometype IIS restriction/modification enzyme2e-0861.2
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase3e-1067.4
NC_018866:1328623:1341430134143013430581629Dehalobacter sp. DCA chromosome, complete genomeputative DNA methylase (modification methylase) (methyltransferase)3e-1067.4
NC_016803:3502749:3528606352860635302281623Desulfovibrio desulfuricans ND132 chromosome, complete genometype I restriction-modification system, M subunit2e-0654.3
NC_012912:1053618:1073108107310810747151608Dickeya zeae Ech1591, complete genometype I restriction-modification system, M subunit2e-0758.2
NC_015510:3375205:3388901338890133904991599Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeN-6 DNA methylase6e-0652.8
NC_015510:4065753:4074953407495340768181866Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeN-6 DNA methylase2e-0757.8
NC_018939:1583653:1590672159067215945113840Helicobacter pylori 26695 chromosome, complete genometype IIS restriction enzyme R and M protein (ECO57IR)2e-0860.8
NC_000915:1583967:1590649159064915944883840Helicobacter pylori 26695, complete genometype IIS restriction enzyme R and M protein (ECO57IR)2e-0860.8
NC_017354:1465925:1468690146869014724393750Helicobacter pylori 52 chromosome, complete genometype IIS restriction-modification protein6e-0859.7
NC_017375:1498000:1498187149818715019603774Helicobacter pylori 83 chromosome, complete genometype II restriction-modification enzyme3e-1273.9
NC_011498:1571840:1575820157582015797283909Helicobacter pylori P12, complete genometype IIS R-M system restriction/modification enzyme7e-1272.8
NC_014555:1477934:1480610148061014843593750Helicobacter pylori PeCan4 chromosome, complete genomeputative type IIS restriction-modification protein1e-0965.5
NC_017161:282500:2902062902062944324227Hydrogenobacter thermophilus TK-6 chromosome, complete genomehypothetical protein4e-0860.5
NC_013799:282500:2902162902162944424227Hydrogenobacter thermophilus TK-6, complete genomeputative restriction endonuclease4e-0860.5
NC_013946:415028:4218694218694261494281Meiothermus ruber DSM 1279 chromosome, complete genomehypothetical protein1e-1379
NC_013407:1205747:1216519121651912201123594Methanocaldococcus vulcanius M7, complete genomehypothetical protein2e-0964.7
NC_009051:1118486:1143895114389511470053111Methanoculleus marisnigri JR1, complete genomeprotein of unknown function DUF4506e-1479.3
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease3e-0963.9
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit5e-1583.2
NC_007426:1489677:1497341149734115011173777Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme2e-1997.4
NC_018681:2447871:2477622247762224793941773Nocardia brasiliensis ATCC 700358 chromosome, complete genomeDNA metyltransferase2e-92340
NC_010682:460523:4830064830064846191614Ralstonia pickettii 12J chromosome 1, complete sequencetype I restriction-modification system, M subunit1e-0862
NC_012470:1061392:1076596107659610782181623Streptococcus equi subsp. zooepidemicus, complete genometype II restriction enzyme and methylase1e-0965.1
NC_010730:1724443:1726422172642217300513630Sulfurihydrogenibium sp. YO3AOP1, complete genomehypothetical protein2e-0861.2
NC_008554:484267:4926344926344960773444Syntrophobacter fumaroxidans MPOB, complete genomehypothetical protein5e-1066.6
NC_013894:464907:4743644743644777233360Thermocrinis albus DSM 14484 chromosome, complete genomehypothetical protein3e-1067.4
NC_015500:2866027:2901708290170829050823375Treponema brennaborense DSM 12168 chromosome, complete genometype IIS restriction endonuclease, putative4e-0757
NC_008786:3915000:3921610392161039232171608Verminephrobacter eiseniae EF01-2, complete genometype I restriction-modification system, M subunit1e-0655.5
NC_007086:557789:5694885694885711041617Xanthomonas campestris pv. campestris str. 8004, complete genometype I site-specific deoxyribonuclease1e-0758.5
NC_003902:555699:5673985673985690141617Xanthomonas campestris pv. campestris str. ATCC 33913, completetype I site-specific deoxyribonuclease1e-0758.5
NC_007508:570000:5801335801335817491617Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype I site-specific deoxyribonuclease (modification subunit)8e-0859.3