Pre_GI: BLASTP Hits

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Query: NC_004347:3028000:3044508 Shewanella oneidensis MR-1, complete genome

Start: 3044508, End: 3045248, Length: 741

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009831:2045811:204581120458112046551741Shewanella sediminis HAW-EB3, complete genome(Formate-C-acetyltransferase)-activating enzyme1e-123442
NC_015061:1598920:160241216024121603209798Rahnella sp. Y9602 chromosome, complete genomepyruvate formate-lyase activating enzyme7e-106383
NC_016818:1605918:160938716093871610184798Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completepyruvate formate-lyase activating enzyme8e-106383
NC_017047:1551836:155532815553281556068741Rahnella aquatilis HX2 chromosome, complete genomepyruvate formate lyase-activating enzyme 12e-105382
NC_011094:1050700:106119810611981061995798Salmonella enterica subsp. enterica serovar Schwarzengrund strpyruvate formate lyase-activating enzyme 11e-102372
NC_010159:1668795:167164316716431672377735Yersinia pestis Angola, complete genomepyruvate formate-lyase 1-activating enzyme3e-102371
NC_009801:995396:9998659998651000662798Escherichia coli E24377A, complete genomepyruvate formate-lyase 1-activating enzyme6e-102370
NC_007712:1601499:162391816239181624658741Sodalis glossinidius str. 'morsitans', complete genomepyruvate formate-lyase 1 activating enzyme2e-98358
NC_015460:418826:434556434556435296741Gallibacterium anatis UMN179 chromosome, complete genomepyruvate formate lyase-activating enzyme 16e-94343
NC_014410:51711:749047490475632729Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,pyruvate formate-lyase activating enzyme6e-72270
NC_019970:35985:607916079161519729Thermoanaerobacterium thermosaccharolyticum M0795, complete genomepyruvate formate-lyase 1-activating enzyme1e-71269
NC_015555:49842:739707397074698729Thermoanaerobacterium xylanolyticum LX-11 chromosome, completepyruvate formate-lyase activating enzyme5e-70264
NC_015275:1223088:124302112430211243746726Clostridium lentocellum DSM 5427 chromosome, complete genomepyruvate formate-lyase activating enzyme6e-65247
NC_014376:317312:336200336200336973774Clostridium saccharolyticum WM1 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-64246
NC_006448:1451729:145231514523151453115801Streptococcus thermophilus LMG 18311, complete genomepyruvate-formate lyase activating enzyme8e-65246
NC_004461:205068:205068205068205823756Staphylococcus epidermidis ATCC 12228, complete genomeformate acetyltransferase activating enzyme6e-64244
NC_010001:3421710:344193634419363442688753Clostridium phytofermentans ISDg, complete genomepyruvate formate-lyase activating enzyme3e-63241
NC_017343:224777:227049227049227804756Staphylococcus aureus subsp. aureus ECT-R 2, complete genomepyruvate formate-lyase activating enzyme2e-61235
NC_014933:2240000:224205322420532242778726Bacteroides helcogenes P 36-108 chromosome, complete genomepyruvate formate-lyase activating enzyme4e-56218
NC_015709:1769806:179812517981251798919795Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completepyruvate formate-lyase activating enzyme5e-55214
NC_016605:233087:236623236623237444822Pediococcus claussenii ATCC BAA-344 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-51202
NC_013410:1285857:129149512914951292271777Fibrobacter succinogenes subsp. succinogenes S85 chromosome,pyruvate formate-lyase activating enzyme1e-51202
NC_018750:3315309:332659433265943327406813Streptomyces venezuelae ATCC 10712, complete genomePyruvate formate-lyase activating enzyme3e-49195
NC_013714:1521404:154305415430541543935882Bifidobacterium dentium Bd1, complete genomepflA1 Pyruvate formate-lyase activating enzyme6e-46184
NC_014614:2500301:252580225258022526560759Clostridium sticklandii, complete genomepyruvate formate lyase activating enzyme 12e-45182
NC_008618:1206157:122747812274781228356879Bifidobacterium adolescentis ATCC 15703, complete genomepyruvate formate-lyase 1 activating enzyme3e-45182
NC_013093:2633000:267457826745782675423846Actinosynnema mirum DSM 43827, complete genomepyruvate formate-lyase activating enzyme1e-42172
NC_010001:1488000:149196114919611492752792Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family1e-36153
NC_009454:2502724:253056025305602531471912Pelotomaculum thermopropionicum SI, complete genomepyruvate-formate lyase-activating enzyme5e-31134
NC_013517:2055071:205983920598392060660822Sebaldella termitidis ATCC 33386, complete genomeglycyl-radical enzyme activating protein family2e-30132
NC_016938:193000:211219211219211995777Melissococcus plutonius DAT561 chromosome 1, complete genomepyruvate formate-lyase activating enzyme8e-30130
NC_012470:2021316:202131620213162022089774Streptococcus equi subsp. zooepidemicus, complete genomepyruvate formate-lyase activating enzyme9e-30130
NC_021182:4058873:406031340603134061218906Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein9e-30130
NC_012108:481657:495044495044495952909Desulfobacterium autotrophicum HRM2, complete genomePflC12e-29129
NC_008563:4707826:472980647298064730723918Escherichia coli APEC O1, complete genomeputative pyruvate-formate lyase-activating enzyme1e-28126
NC_009633:3933941:394874939487493949696948Alkaliphilus metalliredigens QYMF chromosome, complete genomeglycyl-radical activating family protein2e-26119
NC_008750:450233:464493464493465413921Shewanella sp. W3-18-1, complete genomeglycyl-radical enzyme activating protein family6e-25114
NC_009438:212476:226933226933227853921Shewanella putrefaciens CN-32 chromosome, complete genomeglycyl-radical activating family protein6e-25114
NC_009922:2556033:257209025720902573040951Alkaliphilus oremlandii OhILAs, complete genomeglycyl-radical enzyme activating protein family2e-24112
NC_021182:4058873:406569240656924066615924Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein7e-24110
NC_015424:2917817:293754229375422938438897Aeromonas veronii B565 chromosome, complete genomepyruvate formate-lyase 2-activating enzyme8e-24110
NC_014364:4488875:450773445077344508657924Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeglycyl-radical enzyme activating protein family2e-23109
NC_021182:966839:969602969602970534933Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein2e-23108
NC_010674:1496500:150598315059831506936954Clostridium botulinum B str. Eklund 17B, complete genomebenzylsuccinate synthase activating enzyme1e-22106
NC_015577:3621777:364344236434423644344903Treponema azotonutricium ZAS-9 chromosome, complete genomepyruvate formate-lyase-activating enzyme3e-22105
NC_020063:3690308:371903437190343720008975Enterobacteriaceae bacterium strain FGI 57, complete genomeglycyl-radical enzyme activator family protein7e-22103
NC_021184:657093:670474670474671469996Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein2e-21102
NC_021184:657093:657093657093658031939Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein2e-21102
NC_009699:2287893:230355823035582304511954Clostridium botulinum F str. Langeland chromosome, complete genomeglycyl-radical enzyme activating family protein2e-21102
NC_015573:2463123:250043325004332501374942Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeglycyl-radical enzyme activating protein family2e-21102
NC_012563:2384500:239776123977612398714954Clostridium botulinum A2 str. Kyoto, complete genomeglycyl-radical enzyme activating family protein3e-21102
NC_009615:919495:924724924724925629906Parabacteroides distasonis ATCC 8503 chromosome, complete genomepyruvate-formate lyase-activating enzyme3e-21102
NC_009495:2244774:225435722543572255319963Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycyl-radical activating family protein5e-21101
NC_009697:2173000:218299921829992183952954Clostridium botulinum A str. ATCC 19397 chromosome, completeglycyl-radical enzyme activating family protein5e-21101
NC_009698:2171151:218321821832182184171954Clostridium botulinum A str. Hall chromosome, complete genomeglycyl-radical enzyme activating family protein5e-21101
NC_010723:1465097:147619614761961477149954Clostridium botulinum E3 str. Alaska E43, complete genomeglycyl-radical enzyme activating family protein5e-21101
NC_012658:2295536:231172723117272312680954Clostridium botulinum Ba4 str. 657 chromosome, complete genomeglycyl-radical enzyme activating family protein5e-21101
NC_016627:1960097:197152619715261972368843Clostridium clariflavum DSM 19732 chromosome, complete genomeglycine radical enzyme activase, YjjW family3e-2099
NC_014328:4316008:432998643299864330936951Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme4e-2098.2
NC_004557:1553000:156226215622621563224963Clostridium tetani E88, complete genomebenzylsuccinate synthase activating enzyme1e-1997.1
NC_014393:1421122:142540714254071426303897Clostridium cellulovorans 743B chromosome, complete genomeRadical SAM domain-containing protein1e-1996.7
NC_015500:311845:324489324489325265777Treponema brennaborense DSM 12168 chromosome, complete genome(Formate-C-acetyltransferase)-activating enzyme5e-1994.7
NC_009012:1901492:190757919075791908421843Clostridium thermocellum ATCC 27405, complete genomeRadical SAM5e-1994.7
NC_014363:114239:141718141718142665948Olsenella uli DSM 7084 chromosome, complete genomeglycyl-radical enzyme activating protein family5e-1994.7
NC_016584:5625975:563927856392785640246969Desulfosporosinus orientis DSM 765 chromosome, complete genomeglycyl-radical enzyme activator family protein7e-1994.4
NC_010001:1745089:175808817580881759035948Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family9e-1994
NC_009089:1283000:131846813184681319370903Clostridium difficile 630, complete genomeglycerol dehydratase activator1e-1893.2
NC_013716:5141269:516390851639085164771864Citrobacter rodentium ICC168, complete genomeradical SAM superfamily protein2e-1789.7
NC_014618:4010689:404083540408354041698864Enterobacter cloacae SCF1 chromosome, complete genomeradical SAM protein4e-1788.6
NC_014328:2872721:287420728742072875118912Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme4e-1788.6
NC_002937:2933000:293303029330302933953924Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepyruvate formate-lyase 1 activating enzyme, putative2e-1583.2
NC_008751:607209:624617624617625540924Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeglycyl-radical enzyme activating protein family9e-1580.5
NC_016048:3856665:387205538720553872969915Oscillibacter valericigenes Sjm18-20, complete genomeglycyl-radical enzyme activating family protein3e-1479
NC_004603:1464000:146656414665641467445882Vibrio parahaemolyticus RIMD 2210633 chromosome I, completepyruvate formate lyase activating enzyme2e-1376.3
NC_015578:423000:423018423018423869852Treponema primitia ZAS-2 chromosome, complete genomeradical SAM3e-1375.5
AP010958:922937:947234947234948133900Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted pyruvate formate lyase activating enzyme6e-1374.7
NC_013353:922937:947234947234948133900Escherichia coli O103:H2 str. 12009, complete genomepyruvate formate lyase activating enzyme6e-1374.7
NC_013364:928486:951505951505952404900Escherichia coli O111:H- str. 11128, complete genomeputative pyruvate formate lyase activating enzyme6e-1374.7
NC_020291:79502:941829418294691510Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein NrdG2e-1272.4
NC_019757:3010262:302396830239683024591624Cylindrospermum stagnale PCC 7417, complete genomeorganic radical activating enzyme2e-1169.7
NC_014830:3387479:339491033949103395539630Intrasporangium calvum DSM 43043 chromosome, complete genomeRadical SAM domain protein3e-1168.9
NC_015320:273979:281574281574282272699Archaeoglobus veneficus SNP6 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-1168.9
NC_015574:391869:397742397742398455714Methanobacterium sp. SWAN-1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein4e-1168.6
NC_014220:837926:847150847150847641492Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-1167.4
NC_008701:195850:211332211332212051720Pyrobaculum islandicum DSM 4184, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-1066.6
NC_009089:117980:140393140393140932540Clostridium difficile 630, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-1066.6
NC_013316:120759:142198142198142737540Clostridium difficile R20291, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-1066.6
NC_014828:2657623:267336426733642673885522Ethanoligenens harbinense YUAN-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein4e-1065.5
NC_012673:77610:887168871689174459Exiguobacterium sp. AT1b, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein4e-1065.1
NC_009515:616432:632876632876633580705Methanobrevibacter smithii ATCC 35061, complete genomepyruvate formate-lyase activating enzyme, PflA3e-0962.4
NC_014624:2297000:230867423086742309594921Eubacterium limosum KIST612 chromosome, complete genomeputative pyruvate-formate lyase-activating enzyme3e-0962.4
NC_006270:3627974:364934736493473649859513Bacillus licheniformis ATCC 14580, complete genomeiron-binding, putative oxidoreductase3e-0962.4
NC_006322:3628143:364951636495163650028513Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-0962.4
NC_005945:3359598:337082333708233371122300Bacillus anthracis str. Sterne, complete genomeadical activating4e-0962
NC_016023:1923170:192802619280261928502477Bacillus coagulans 36D1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0960.8
NC_009635:518000:537434537434538171738Methanococcus aeolicus Nankai-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0860.5
NC_021171:608315:628611628611629099489Bacillus sp. 1NLA3E, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0860.1
NC_014614:1090000:109602810960281096540513Clostridium sticklandii, complete genomeanaerobic ribonucleotide reductase activating protein2e-0859.7
NC_009699:1122000:112656011265601127153594Clostridium botulinum F str. Langeland chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0858.9
NC_004663:2509433:251430925143092514803495Bacteroides thetaiotaomicron VPI-5482, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein5e-0858.2
NC_012658:1052957:106572210657221066315594Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein5e-0858.2
NC_016814:18000:3078730787322021416Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceK04069 pyruvate formate lyase activating enzyme8e-0857.8
NC_014633:837588:882099882099882599501Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceribonucleoside-triphosphate reductase class III activase subunit1e-0757
NC_014961:1071424:109188810918881092634747Desulfurococcus mucosus DSM 2162 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0755.8
NC_014960:1835697:184783718478371848409573Anaerolinea thermophila UNI-1, complete genomehypothetical protein3e-0755.5
NC_009443:1996812:201924120192412019798558Streptococcus suis 98HAH33, complete genomeorganic radical activating protein3e-0755.5
NC_012924:1997052:201948520194852020042558Streptococcus suis SC84, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0755.5
NC_012926:2047303:206981220698122070369558Streptococcus suis BM407 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0755.5
NC_013131:8029621:803566880356688036357690Catenulispora acidiphila DSM 44928, complete genomeputative radical activating enzyme3e-0755.5
NC_014484:762710:765636765636766358723Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein4e-0755.1
NC_015425:198315:200437200437200931495Clostridium botulinum BKT015925 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein5e-0755.1
NC_000868:696296:7126187126187136641047Pyrococcus abyssi GE5, complete genomepyruvate formate-lyase activating enzyme related protein5e-0754.7
NC_013156:1240926:125357012535701254259690Methanocaldococcus fervens AG86, complete genomeRadical SAM domain protein8e-0754.3
NC_015574:2221220:223267722326772233378702Methanobacterium sp. SWAN-1 chromosome, complete genomeRadical SAM domain-containing protein8e-0754.3
NC_021175:1973880:199462519946251995224600Streptococcus oligofermentans AS 1.3089, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0753.9
NC_015499:1097432:109743210974321098121690Thermodesulfobium narugense DSM 14796 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0653.1
NC_014829:4511738:451786345178634518372510Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0652.8
NC_016818:546805:568232568232568696465Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0652.4
NC_012034:390273:413363413363414211849Anaerocellum thermophilum DSM 6725, complete genomeRadical SAM domain protein5e-0651.6