Pre_GI: BLASTP Hits

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Query: NC_004347:3028000:3040153 Shewanella oneidensis MR-1, complete genome

Start: 3040153, End: 3041127, Length: 975

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009831:2045811:2051994205199420534691476Shewanella sediminis HAW-EB3, complete genomeformate/nitrite transporter4e-112404
NC_014541:1617678:1626115162611516275391425Ferrimonas balearica DSM 9799 chromosome, complete genomeformate/nitrite transporter8e-72270
NC_011094:1050700:106594410659441066759816Salmonella enterica subsp. enterica serovar Schwarzengrund strformate transporter FocA5e-70265
NC_007712:1601499:162716116271611628018858Sodalis glossinidius str. 'morsitans', complete genomeputative formate transport protein5e-66251
NC_017096:1147441:115299911529991153835837Caldisericum exile AZM16c01, complete genomeputative formate transporter1e-37157
NC_014376:1217000:123655712365571237465909Clostridium saccharolyticum WM1 chromosome, complete genomeformate/nitrite transporter2e-37156
NC_008435:604772:604772604772605719948Rhodopseudomonas palustris BisA53, complete genomeformate/nitrite transporter2e-33143
NC_019978:1244000:126194812619481262751804Halobacteroides halobius DSM 5150, complete genomeformate/nitrite transporter3e-25116
NC_003909:3483244:350449935044993505314816Bacillus cereus ATCC 10987, complete genomeformate transporter, putative1e-23110
NC_011773:3547507:356876635687663569581816Bacillus cereus AH820 chromosome, complete genomeputative formate transporter3e-23109
NC_013791:1082951:108999110899911090821831Bacillus pseudofirmus OF4 chromosome, complete genomeformate/nitrite transporter4e-23108
NC_005773:5310339:532528553252855326100816Pseudomonas syringae pv. phaseolicola 1448A, complete genomeFormate transporter6e-23108
NC_007005:5500196:552150555215055522320816Pseudomonas syringae pv. syringae B728a, complete genomeFormate/nitrite transporter8e-23107
NC_014166:716000:725977725977726831855Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeformate/nitrite transporter2e-22106
NC_013887:213699:228905228905229720816Methanocaldococcus sp. FS406-22 chromosome, complete genomeformate/nitrite transporter2e-22106
NC_012673:77610:858608586086699840Exiguobacterium sp. AT1b, complete genomeformate/nitrite transporter2e-20100
NC_005945:3321600:333035733303573331136780Bacillus anthracis str. Sterne, complete genomeformate transporter, putative1e-1997.8
NC_003997:3320906:332966333296633330442780Bacillus anthracis str. Ames, complete genomeformate transporter, putative1e-1997.8
NC_007530:3321033:332979033297903330569780Bacillus anthracis str. 'Ames Ancestor', complete genomeformate transporter, putative1e-1997.8
NC_012581:897957:908173908173908952780Bacillus anthracis str. CDC 684 chromosome, complete genomeputative formate transporter1e-1997.8
NC_012659:3320933:332969033296903330469780Bacillus anthracis str. A0248, complete genomeputative formate transporter1e-1997.8
NC_014976:759129:787843787843788643801Bacillus subtilis BSn5 chromosome, complete genomeputative formate/nitrite transporter1e-1997.1
NC_011773:3399531:340938334093833410162780Bacillus cereus AH820 chromosome, complete genomeputative formate transporter2e-1996.7
NC_014393:1221000:122423112242311224998768Clostridium cellulovorans 743B chromosome, complete genomeformate/nitrite transporter3e-1996.3
NC_014541:1617678:162410516241051624890786Ferrimonas balearica DSM 9799 chromosome, complete genomeformate/nitrite transporter6e-1891.7
NC_018697:825058:838838838838839647810Cycloclasticus sp. P1 chromosome, complete genomeFormate/nitrite transporter6e-1891.7
NC_009515:1409912:142815014281501428953804Methanobrevibacter smithii ATCC 35061, complete genomeformate/nitrite transporter, FdhC2e-1790.5
NC_017353:646195:647512647512648330819Staphylococcus lugdunensis N920143, complete genomeputative nitrite transporter2e-1790.1
NC_003366:128783:130202130202130960759Clostridium perfringens str. 13, complete genomehypothetical protein1e-1687.4
NC_004461:2002000:202262920226292023450822Staphylococcus epidermidis ATCC 12228, complete genomeNirC protein2e-1687
NC_002953:2435667:245477224547722455596825Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative nitrite transporter5e-1685.5
NC_007793:2510801:252627725262772527101825Staphylococcus aureus subsp. aureus USA300, complete genomeformate/nitrite transporter family protein5e-1685.5
NC_002951:2448000:246271124627112463535825Staphylococcus aureus subsp. aureus COL, complete genomeformate/nitrite transporter family protein5e-1685.5
NC_007795:2455468:247337624733762474200825Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeformate/nitrite transporter, putative5e-1685.5
NC_003923:2460130:247560624756062476430825Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein5e-1685.5
NC_009641:2513300:253120925312092532033825Staphylococcus aureus subsp. aureus str. Newman chromosome,formate/nitrite transporter family protein5e-1685.5
NC_016912:2329113:234458923445892345413825Staphylococcus aureus subsp. aureus VC40 chromosome, completeformate/nitrite transporter family protein5e-1685.5
NC_016941:2395502:241178124117812412605825Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative nitrite transporter5e-1685.5
NC_017341:2544327:255980325598032560627825Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,formate/nitrite transporter family protein5e-1685.5
NC_017347:2511783:252725925272592528083825Staphylococcus aureus subsp. aureus T0131 chromosome, completeFNT family formate-nitrite transporter5e-1685.5
NC_017351:2489460:250553525055352506359825Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeformate/nitrite transporter family protein5e-1685.5
NC_002745:2446722:246219924621992463023825Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein4e-1685.5
NC_002758:2515310:253321825332182534042825Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to NirC protein4e-1685.5
NC_009782:2519379:253485625348562535680825Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein4e-1685.5
NC_017343:2367177:238508523850852385909825Staphylococcus aureus subsp. aureus ECT-R 2, complete genomeformate/nitrite transporter family protein4e-1685.5
NC_009632:2545419:256327725632772564101825Staphylococcus aureus subsp. aureus JH1 chromosome, completeformate/nitrite transporter4e-1685.5
NC_016928:2411486:242713824271382427962825Staphylococcus aureus subsp. aureus M013 chromosome, completeformate/nitrite transporter family protein6e-1685.1
NC_017338:2456000:247124424712442472068825Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeFormate/nitrite transporter family protein6e-1685.1
NC_002952:2550500:256737825673782568202825Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative nitrite transporter7e-1684.7
NC_013450:2463271:247874824787482479494747Staphylococcus aureus subsp. aureus ED98, complete genomeformate/nitrite transporter family protein1e-1584.3
NC_010674:3141228:314225231422523143019768Clostridium botulinum B str. Eklund 17B, complete genomeformate/nitrite family of transporter1e-1584.3
NC_017342:857630:860275860275861126852Staphylococcus aureus subsp. aureus TCH60 chromosome, completeformate/nitrite transporter1e-1584.3
NC_017337:2478877:249552924955292496353825Staphylococcus aureus subsp. aureus ED133 chromosome, completeformate/nitrite transporter family protein2e-1584
NC_007622:2399347:241502824150282415852825Staphylococcus aureus RF122, complete genomeprobable nitrite transporter2e-1583.6
NC_007168:665284:668501668501669322822Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein2e-1583.6
NC_010079:2510951:252642725264272527134708Staphylococcus aureus subsp. aureus USA300_TCH1516, completeFNT family formate-nitrite transporter3e-1583.2
NC_008740:220642:220642220642221490849Marinobacter aquaeolei VT8, complete genomeformate/nitrite transporter1e-1480.9
NC_016641:2700765:270628827062882707076789Paenibacillus terrae HPL-003 chromosome, complete genometransporter6e-1478.6
NC_014218:534986:554393554393555169777Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeformate/nitrite transporter9e-1477.8
NC_012988:1540587:156016215601621561001840Methylobacterium extorquens DM4, complete genomeformate/nitrate transporter5e-1375.5
NC_011757:1246000:126184912618491262688840Methylobacterium chloromethanicum CM4, complete genomeformate/nitrite transporter5e-1375.5
NC_010172:1222150:123482912348291235668840Methylobacterium extorquens PA1, complete genomeformate/nitrite transporter5e-1375.5
NC_012808:921985:924806924806925645840Methylobacterium extorquens AM1, complete genomeputative formate/nitrate transporter5e-1375.5
NC_012121:1894148:190740619074061908236831Staphylococcus carnosus subsp. carnosus TM300, complete genomeNirC protein1e-1273.9
NC_016614:822715:844230844230845078849Vibrio sp. EJY3 chromosome 2, complete sequenceformate dehydrogenase6e-1272
NC_014727:853500:854219854219854989771Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,formate/nitrite family of transporter6e-1272
NC_016928:306629:330082330082330927846Staphylococcus aureus subsp. aureus M013 chromosome, completeformate/nitrite transporter family protein2e-0757
NC_009782:325892:347436347436348260825Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein2e-0756.6
NC_002758:325889:347433347433348257825Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to NirC protein2e-0756.6
NC_002745:325932:347476347476348300825Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein2e-0756.6
NC_002953:303223:326064326064326888825Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative formate/nitrite transporter2e-0756.6
NC_007622:271673:291949291949292770822Staphylococcus aureus RF122, complete genomeprobable formate/nitrite transport protein2e-0756.6