Pre_GI: BLASTP Hits

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Query: NC_004347:3028000:3037551 Shewanella oneidensis MR-1, complete genome

Start: 3037551, End: 3038111, Length: 561

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009831:2045811:2056843205684320583841542Shewanella sediminis HAW-EB3, complete genomeC4-dicarboxylate anaerobic carrier9e-71265
NC_014541:2510819:2513700251370025151571458Ferrimonas balearica DSM 9799 chromosome, complete genomeC4-dicarboxylate anaerobic carrier2e-35148
NC_008601:246583:2759112759112774221512Francisella tularensis subsp. novicida U112, complete genomeC4-dicarboxylate anaerobic carrier1e-32139
NC_016641:2773757:2797894279789427993121419Paenibacillus terrae HPL-003 chromosome, complete genomeC4-dicarboxylate anaerobic carrier2e-26118
NC_012780:430653:4306534306534320981446Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencehypothetical protein5e-25114
NC_010718:2860096:2874496287449628758781383Natranaerobius thermophilus JW/NM-WN-LF, complete genomeC4-dicarboxylate anaerobic carrier1e-22105
NC_007168:195638:1956381956381970321395Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein4e-22104
NC_015696:220798:2242602242602256751416Francisella sp. TX077308 chromosome, complete genomeArginine/ornithine antiporter ArcD5e-21100
NC_014364:3500041:3501368350136835027921425Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeC4-dicarboxylate anaerobic carrier7e-1993.6
NC_017986:2548720:2569814256981425712531440Pseudomonas putida ND6 chromosome, complete genomeC4-dicarboxylate anaerobic carrier3e-1891.3
NC_004557:2607073:2617884261788426192811398Clostridium tetani E88, complete genometransporter2e-1685.5
NC_008710:900586:9140649140649154791416Borrelia turicatae 91E135, complete genomearginine/ornithine antiporter2e-1685.1
NC_015389:809474:8315898315898330521464Coriobacterium glomerans PW2 chromosome, complete genomeC4-dicarboxylate anaerobic carrier5e-1684.3
NC_014614:1090000:1106312110631211078261515Clostridium sticklandii, complete genomeconserved membrane protein of unknown function3e-1581.3
NC_012691:2614603:2683425268342526848701446Tolumonas auensis DSM 9187, complete genomeC4-dicarboxylate anaerobic carrier5e-1580.5
NC_010673:908940:9173459173459187631419Borrelia hermsii DAH, complete genomearginine/ornithine antiporter8e-1580.1
NC_008601:246583:275553275553275780228Francisella tularensis subsp. novicida U112, complete genome3e-1478.2
NC_016751:1979201:1980549198054919820361488Marinitoga piezophila KA3 chromosome, complete genomehypothetical protein6e-1373.9
NC_009495:1516000:1535500153550015370351536Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeC4-dicarboxylate transporter3e-1271.6
NC_004461:205068:2170382170382186031566Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein2e-1168.6
NC_003454:865368:8826568826568841671512Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeTransporter6e-1167
NC_011900:2107133:2127634212763421291451512Streptococcus pneumoniae ATCC 700669, complete genomeC4-dicarboxylate anaerobic carrier protein3e-1065.1
NC_012467:1997484:2018682201868220201931512Streptococcus pneumoniae P1031, complete genomearginine-ornithine antiporter4e-1064.3
NC_008533:1935500:1952608195260819541191512Streptococcus pneumoniae D39, complete genomehypothetical protein4e-1064.3
NC_010582:2091138:2112506211250621140171512Streptococcus pneumoniae CGSP14, complete genomehypothetical protein4e-1064.3
NC_003098:1925783:1945106194510619466171512Streptococcus pneumoniae R6, complete genomehypothetical protein4e-1064.3
NC_012468:2069238:2088265208826520897761512Streptococcus pneumoniae 70585, complete genomearginine-ornithine antiporter4e-1064.3
NC_014498:2127000:2143987214398721454981512Streptococcus pneumoniae 670-6B chromosome, complete genomearginine-ornithine antiporter4e-1064.3
NC_012466:2008000:2027031202703120285421512Streptococcus pneumoniae JJA, complete genomearginine-ornithine antiporter4e-1064.3
NC_013515:183088:2226022226022240561455Streptobacillus moniliformis DSM 12112, complete genomeC4-dicarboxylate anaerobic carrier9e-0960.1