Pre_GI: BLASTP Hits

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Query: NC_004337:4374500:4397528 Shigella flexneri 2a str. 301, complete genome

Start: 4397528, End: 4399078, Length: 1551

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:4417000:4441239444123944427891551Shigella flexneri 2002017 chromosome, complete genomehypothetical protein01027
NC_008258:4345400:4366158436615843676601503Shigella flexneri 5 str. 8401, complete genomehypothetical protein0988
NC_010498:4821519:4843468484346848449701503Escherichia coli SMS-3-5, complete genomehypothetical protein0979
NC_013941:5192500:5192653519265351941551503Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0978
AC_000091:4472000:4493241449324144947431503Escherichia coli W3110 DNA, complete genomepredicted ATPase0977
NC_012967:4449576:4471788447178844732901503Escherichia coli B str. REL606 chromosome, complete genomeputative ATPase0977
NC_011741:4570498:4572799457279945743011503Escherichia coli IAI1 chromosome, complete genomeputative ATPase0975
CU928160:4570498:4572799457279945743011503Escherichia coli IAI1 chromosome, complete genomeputative ATPase0975
NC_007613:4217557:4230256423025642317581503Shigella boydii Sb227, complete genomehypothetical protein0973
NC_011415:4767892:4767892476789247693941503Escherichia coli SE11 chromosome, complete genomehypothetical protein0969
NC_011742:4795733:4817932481793248194341503Escherichia coli S88 chromosome, complete genomeATPase0969
CP002797:4603787:4605030460503046065321503Escherichia coli NA114, complete genomeHypothetical protein0966
NC_008563:4905186:4905186490518649067151530Escherichia coli APEC O1, complete genomepredicted ATPase0962
NC_013716:3512950:3514145351414535156471503Citrobacter rodentium ICC168, complete genomehypothetical protein0933
NC_010067:3056774:3080218308021830817201503Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0910
NC_020063:4127161:4144584414458441460861503Enterobacteriaceae bacterium strain FGI 57, complete genomeputative ATPase0909
NC_013956:595320:5973855973855988871503Pantoea ananatis LMG 20103 chromosome, complete genomeYjgR0844
NC_016816:3974895:3995402399540239969041503Pantoea ananatis LMG 5342, complete genomeATPase0844
NC_010694:436500:4390204390204405191500Erwinia tasmaniensis, complete genomeConserved hypothetical protein YjgR0825
NC_013961:441719:4429984429984444971500Erwinia amylovora, complete genomeUncharacterized protein yjgR0813
NC_013971:3296272:3326792332679233282911500Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein0813
NC_008752:3511006:3532402353240235339251524Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF853, NPT hydrolase putative4e-162571
NC_010524:2117347:2117347211734721189241578Leptothrix cholodnii SP-6, complete genomeprotein of unknown function DUF853 NPT hydrolase putative2e-155549
NC_015731:3180194:3181601318160131831211521Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein1e-152540
NC_019903:134169:1381801381801396881509Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATPase3e-150532
NC_013165:2440883:2459707245970724613411635Slackia heliotrinireducens DSM 20476, complete genomepredicted ATPase7e-145514
NC_009727:1001203:1001203100120310025941392Coxiella burnetii Dugway 7E9-12, complete genomehypothetical protein3e-140498
NC_002971:951102:9706179706179720081392Coxiella burnetii RSA 493, complete genomehypothetical protein4e-139495
NC_003911:2042389:2061709206170920632621554Silicibacter pomeroyi DSS-3, complete genomehypothetical protein6e-139494
NC_011527:953442:9558659558659572561392Coxiella burnetii CbuG_Q212, complete genomeATPase2e-138493
NC_012004:470492:4894734894734909721500Streptococcus uberis 0140J, complete genomehypothetical protein1e-137490
NC_007759:2146254:2163581216358121650711491Syntrophus aciditrophicus SB, complete genomeATPase2e-136486
NC_011528:767940:7679407679407690281089Coxiella burnetii CbuK_Q154, complete genomeATPase2e-112406
NC_019673:1275627:1301285130128513027991515Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-102374
NC_017186:7822448:7825448782544878269741527Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein3e-101369
NC_014318:7821227:7825402782540278269281527Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein3e-101369
NC_013235:1938889:1958413195841319600801668Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF853 NPT hydrolase putative6e-99361
NC_017955:693303:7178237178237194331611Modestobacter marinus, complete genomeATPase3e-98359
NC_011985:2902000:2912648291264829142491602Agrobacterium radiobacter K84 chromosome 1, complete genomeATP-binding protein1e-96353
NC_009077:3851203:3852116385211638536871572Mycobacterium sp. JLS, complete genomeprotein of unknown function DUF853, NPT hydrolase putative3e-94346
NC_014168:709036:7116137116137131931581Segniliparus rotundus DSM 44985 chromosome, complete genomehypothetical protein5e-91335