Pre_GI: BLASTP Hits

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Query: NC_004337:367687:384315 Shigella flexneri 2a str. 301, complete genome

Start: 384315, End: 384812, Length: 498

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:402179402179402646468Shigella flexneri 2002017 chromosome, complete genomeUbiquinol oxidase subunit 24e-88323
NC_008258:401786:421966421966422433468Shigella flexneri 5 str. 8401, complete genome4e-88323
NC_004741:366822:383448383448383915468Shigella flexneri 2a str. 2457T, complete genome4e-88323
NC_015663:2694373:272831827283182729262945Enterobacter aerogenes KCTC 2190 chromosome, complete genomecytochrome o ubiquinol oxidase subunit II7e-81299
NC_020181:2714559:271664127166412717459819Enterobacter aerogenes EA1509E, complete genomeCytochrome O ubiquinol oxidase subunit II9e-81298
NC_012779:2127542:214110021411002141972873Edwardsiella ictaluri 93-146, complete genomeubiquinol oxidase, subunit II, putative4e-50196
NC_015497:3614817:362581436258143626749936Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeubiquinol oxidase, subunit II2e-41168
NC_004129:5781413:579520357952035796147945Pseudomonas fluorescens Pf-5, complete genomecytochrome o ubiquinol oxidase, subunit II3e-40164
NC_017256:515579:517572517572518492921Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,cytochrome O ubiquinol oxidase subunit II3e-38157
NC_004061:498483:517907517907518779873Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomecytochrome O ubiquinol oxidase A6e-38156
NC_017259:480656:495681495681496628948Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,cytochrome O ubiquinol oxidase subunit II2e-36150
NC_010682:3313944:331394433139443314906963Ralstonia pickettii 12J chromosome 1, complete sequenceubiquinol oxidase, subunit II7e-36149
NC_009654:91096:99838998381008841047Marinomonas sp. MWYL1, complete genomeubiquinol oxidase, subunit II8e-36149
NC_017253:509494:517697517697518614918Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,cytochrome O ubiquinol oxidase subunit II1e-35149
NC_002528:505951:516796516796517686891Buchnera aphidicola str. APS (Acyrthosiphon pisum), completecytochrome O ubiquinol oxidase subunit II1e-35149
NC_016632:1049510:105147910514791052462984Serratia symbiotica str. 'Cinara cedri' chromosome, completecytochrome o ubiquinol oxidase subunit II2e-34145
NC_007508:1446526:146439714643971465332936Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome O ubiquinol oxidase subunit II5e-34143
NC_020209:1986503:202134720213472022279933Pseudomonas poae RE*1-1-14, complete genomecytochrome o ubiquinol oxidase subunit II2e-30131
NC_010943:1379707:1393703139370313947431041Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane ubiquinol oxidase subunit 2 precursor3e-30130
NC_014910:2045088:206712720671272068116990Alicycliphilus denitrificans BC chromosome, complete genomeubiquinol oxidase, subunit ii3e-30130
NC_015723:1047418:1047418104741810484551038Cupriavidus necator N-1 chromosome 2, complete sequenceubiquinol oxidase subunit II3e-26117
NC_018677:111500:143194143194144012819Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeCytochrome O ubiquinol oxidase subunit II9e-25112
NC_013205:526281:567538567538568434897Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,cytochrome c oxidase subunit II6e-23106
NC_005955:139907:150857150857151828972Bartonella quintana str. Toulouse, complete genomeCytochrome o ubiquinol oxidase subunit II1e-21102
NC_015942:1047576:105388010538801054851972Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome c oxidase subunit II1e-21102
NC_015675:4493758:4498924449892444999461023Mesorhizobium opportunistum WSM2075 chromosome, complete genomeubiquinol oxidase subunit II7e-2096.3
NC_005956:152497:163432163432164403972Bartonella henselae str. Houston-1, complete genomeCytochrome o ubiquinol oxidase subunit II8e-2096.3
NC_015850:169180:186371186371187342972Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit II2e-1994.7
NC_015850:2259769:227731122773112278279969Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit II8e-1992.8
NC_020300:131782:142981142981143952972Bartonella australis Aust/NH1, complete genomecytochrome o ubiquinol oxidase subunit II2e-1891.3
NC_002976:638799:6407876407876419111125Staphylococcus epidermidis RP62A, complete genomequinol oxidase, subunit II2e-1581.6
NC_004461:746284:7482727482727493961125Staphylococcus epidermidis ATCC 12228, complete genomequinol oxidase polypeptide II QoxA2e-1581.6
NC_020164:1784223:1801503180150318026121110Staphylococcus warneri SG1, complete genomehypothetical protein8e-1579.7
NC_017278:48630:5221952219532321014Thermus sp. CCB_US3_UF1 chromosome, complete genomeCytochrome c oxidase subunit 21e-1272.4
NC_013743:1937125:195011219501121950882771Haloterrigena turkmenica DSM 5511, complete genomecytochrome c oxidase, subunit II3e-1270.9
NC_015387:1965711:1969300196930019703371038Marinithermus hydrothermalis DSM 14884 chromosome, complete genomecytochrome c oxidase, subunit II1e-1168.9
NC_019962:2189432:219479521947952195562768Natrinema pellirubrum DSM 15624, complete genomecytochrome c oxidase, subunit II1e-1168.9
NC_009523:2769154:2789624278962427907271104Roseiflexus sp. RS-1 chromosome, complete genomecytochrome c oxidase subunit II1e-0962.8
NC_009956:88354:1163591163591173961038Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequencecytochrome c oxidase subunit II2e-0858.2
NC_015186:2884866:289476128947612895717957Acidiphilium multivorum AIU301, complete genomecytochrome c oxidase subunit II3e-0857.8
NC_014315:1463383:1469871146987114709171047Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit II8e-0856.2
NC_016626:1592781:161440916144091615404996Burkholderia sp. YI23 plasmid byi_1p, complete sequencecytochrome C oxidase subunit II1e-0755.8
NC_007626:2354260:235426023542602355141882Magnetospirillum magneticum AMB-1, complete genomeHeme/copper-type cytochrome/quinol oxidase2e-0754.7
NC_007947:1556437:1558944155894415599841041Methylobacillus flagellatus KT, complete genomecytochrome c oxidase, subunit II4e-0753.9
NC_003919:4568892:457068945706894571675987Xanthomonas axonopodis pv. citri str. 306, complete genomecytochrome C oxidase subunit II2e-0651.6
NC_007508:4593446:459524345952434596202960Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome c oxidase, subunit II4e-0650.8
NC_014315:3278386:328888032888803289725846Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit II7e-0650.1
NC_007484:3429140:344260534426053443450846Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase, subunit II7e-0650.1