Pre_GI: BLASTP Hits

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Query: NC_004337:367687:380467 Shigella flexneri 2a str. 301, complete genome

Start: 380467, End: 381354, Length: 888

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:398331398331399221891Shigella flexneri 2002017 chromosome, complete genomeCytochrome o ubiquinol oxidase C subunit8e-156549
NC_004741:366822:379600379600380487888Shigella flexneri 2a str. 2457T, complete genomeprotoheme IX farnesyltransferase9e-156549
NC_008258:401786:418118418118419008891Shigella flexneri 5 str. 8401, complete genome4e-154543
NC_020181:2714559:272041427204142721301888Enterobacter aerogenes EA1509E, complete genomeHeme O synthase, protoheme IX farnesyltransferase COX10-CtaB3e-147520
NC_015663:2694373:272447827244782725365888Enterobacter aerogenes KCTC 2190 chromosome, complete genomeprotoheme IX farnesyltransferase3e-147520
NC_012779:2127542:213725521372552138145891Edwardsiella ictaluri 93-146, complete genomeprotoheme IX farnesyltransferase, putative1e-128459
NC_004129:5781413:579132357913235792210888Pseudomonas fluorescens Pf-5, complete genomeprotoheme IX farnesyltransferase1e-99363
NC_009654:91096:103872103872104762891Marinomonas sp. MWYL1, complete genomeprotoheme IX farnesyltransferase2e-85315
NC_015497:3614817:362195136219513622841891Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeprotoheme IX farnesyltransferase5e-84310
NC_017259:480656:491870491870492745876Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,protoheme IX farnesyltransferase1e-58226
NC_017253:509494:513879513879514745867Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,protoheme IX farnesyltransferase2e-57222
NC_002528:505951:512987512987513844858Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeprotohaeme IX farnesyltransferase2e-57222
NC_018677:111500:146818146818147672855Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeHeme O synthase protoheme IX farnesyltransferase COX10-CtaB3e-54212
NC_004061:498483:514111514111514965855Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeprotoheme IX farnesyltransferase3e-54212
NC_013894:1380564:138139313813931382283891Thermocrinis albus DSM 14484 chromosome, complete genomeprotoheme IX farnesyltransferase6e-38157
NC_014012:207289:219014219014219928915Shewanella violacea DSS12, complete genomeprotoheme IX farnesyltransferase3e-35149
NC_006370:166000:1780171780171790481032Photobacterium profundum SS9 chromosome 1, complete sequenceprotoheme IX farnesyltransferase8e-35147
NC_017190:1465079:152155415215541522471918Bacillus amyloliquefaciens LL3 chromosome, complete genomecytochrome caa3 oxidase assembly factor1e-34147
NC_016830:81382:943229432295221900Pseudomonas fluorescens F113 chromosome, complete genomeprotein CtaB1e-33143
NC_014831:1906691:1922629192262919236481020Thermaerobacter marianensis DSM 12885 chromosome, complete genomeprotoheme IX farnesyltransferase3e-32139
NC_014315:3278386:328155832815583282457900Nitrosococcus watsoni C-113 chromosome, complete genomeprotoheme IX farnesyltransferase2e-31136
NC_007484:3429140:343528634352863436185900Nitrosococcus oceani ATCC 19707, complete genomeProtoheme IX farnesyltransferase1e-30134
NC_011884:1029328:104392110439211044895975Cyanothece sp. PCC 7425, complete genomeprotoheme IX farnesyltransferase2e-30133
NC_015379:89441:108850108850109749900Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative protoheme IX farnesyltransferase2e-30132
NC_004757:1089057:109800210980021098898897Nitrosomonas europaea ATCC 19718, complete genomeprotoheme IX farnesyltransferase3e-30132
NC_014643:2056280:2105364210536421064431080Rothia dentocariosa ATCC 17931 chromosome, complete genomeprotoheme IX farnesyltransferase3e-30132
NC_013161:212941:235136235136236107972Cyanothece sp. PCC 8802, complete genomeprotoheme IX farnesyltransferase5e-30131
NC_011726:213956:234955234955235926972Cyanothece sp. PCC 8801, complete genomeprotoheme IX farnesyltransferase6e-30131
NC_006177:2211458:223331422333142234210897Symbiobacterium thermophilum IAM 14863, complete genomeputative heme O synthase7e-30131
NC_015563:3074691:309197030919703092875906Delftia sp. Cs1-4 chromosome, complete genomeprotoheme IX farnesyltransferase1e-29130
NC_012522:7596039:760104176010417602024984Rhodococcus opacus B4, complete genomeputative protoheme IX farnesyltransferase3e-28125
NC_009465:29735:311203112032013894Candidatus Vesicomyosocius okutanii HA, complete genomeprotoheme IX farnesyltransferase1e-26120
NC_015731:402280:416575416575417468894Nitrosomonas sp. Is79A3 chromosome, complete genomeProtoheme IX farnesyltransferase2e-26119
NC_013521:2193203:221636822163682217252885Sanguibacter keddieii DSM 10542, complete genomeprotoheme IX farnesyltransferase1e-25117
NC_020133:2886541:289006828900682891042975Mycobacterium liflandii 128FXT, complete genomecytochrome C oxidase assembly factor CtaB2e-25116
NC_016768:2764000:277422527742252775151927Mycobacterium tuberculosis KZN 4207 chromosome, complete genomecytochrome C oxidase assembly factor ctaB6e-25114
NC_009565:1629780:163962516396251640551927Mycobacterium tuberculosis F11, complete genomecytochrome C oxidase assembly factor ctaB6e-25114
NC_015848:1647523:165833516583351659261927Mycobacterium canettii CIPT 140010059, complete genomeputative cytochrome C oxidase assembly factor CTAB6e-25114
NC_013446:3034486:305666830566683057573906Comamonas testosteroni CNB-2, complete genomeprotoheme IX farnesyltransferase1e-24113
NC_002945:1621765:163161316316131632539927Mycobacterium bovis AF2122/97, complete genomeprotoheme IX farnesyltransferase2e-24113
NC_013124:1784117:179765217976521798545894Acidimicrobium ferrooxidans DSM 10331, complete genomeprotoheme IX farnesyltransferase4e-23108
NC_015387:1965711:1967458196745819692811824Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeProtoheme IX farnesyltransferase6e-21101
NC_016800:1243000:131259613125961313543948Corynebacterium diphtheriae BH8 chromosome, complete genomeprotoheme IX farnesyltransferase7e-2098.2
NC_002935:1237585:131033913103391311271933Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein7e-2098.2
NC_017278:48630:5038150381522071827Thermus sp. CCB_US3_UF1 chromosome, complete genomeProtoheme IX farnesyltransferase8e-2097.8
NC_005955:427142:443031443031443966936Bartonella quintana str. Toulouse, complete genomeprotoheme IX farnesyltransferase1e-1997.4
NC_016802:1256287:128492812849281285875948Corynebacterium diphtheriae HC02 chromosome, complete genomeprotoheme IX farnesyltransferase1e-1997.1
NC_016786:1251765:128399712839971284944948Corynebacterium diphtheriae HC01 chromosome, complete genomeprotoheme IX farnesyltransferase2e-1996.7
NC_016783:1274000:130832813083281309275948Corynebacterium diphtheriae INCA 402 chromosome, complete genomeprotoheme IX farnesyltransferase2e-1996.7
NC_016782:1251796:128402812840281284975948Corynebacterium diphtheriae 241 chromosome, complete genomeprotoheme IX farnesyltransferase2e-1996.7
NC_015850:169180:191525191525192469945Acidithiobacillus caldus SM-1 chromosome, complete genomeheme O synthase, protoheme IX farnesyltransferase COX10-CtaB5e-1995.1
NC_006677:2042387:204238720423872043337951Gluconobacter oxydans 621H, complete genomeprotoheme IX farnesyltransferase2e-1893.2
NC_011206:2685499:272649527264952727439945Acidithiobacillus ferrooxidans ATCC 53993, complete genomeprotoheme IX farnesyltransferase3e-1892.8
NC_011761:2785660:282665628266562827600945Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeprotoheme IX farnesyltransferase3e-1892.8
NC_015942:1824847:184796518479651848909945Acidithiobacillus ferrivorans SS3 chromosome, complete genomeProtoheme IX farnesyltransferase1e-1687
NC_016645:633988:6476246476246489131290Pyrobaculum sp. 1860 chromosome, complete genomeprenyltransferase6e-1684.7
NC_015914:2658845:267112826711282672030903Cyclobacterium marinum DSM 745 chromosome, complete genomeProtoheme IX farnesyltransferase2e-1479.7
NC_016510:1072709:107839510783951079300906Flavobacterium columnare ATCC 49512 chromosome, complete genomeprotoheme IX farnesyltransferase3e-1479.3
NC_014973:54449:553365533656181846Geobacter sp. M18 chromosome, complete genomeUbiA prenyltransferase9e-1477.8
NC_020054:1335699:134823613482361349141906Fibrella aestuarina BUZ 2 drat genomeprotoheme IX farnesyltransferase9e-1477.8
NC_013730:6901725:691304969130496913927879Spirosoma linguale DSM 74, complete genomeprotoheme IX farnesyltransferase2e-1170.1
NC_015703:3444025:345537034553703456245876Runella slithyformis DSM 19594 chromosome, complete genomeProtoheme IX farnesyltransferase3e-1169.3
NC_009465:29735:814778147782346870Candidatus Vesicomyosocius okutanii HA, complete genome4-hydroxybenzoate octaprenyltransferase2e-0860.1
NC_020209:4643901:466194846619484662838891Pseudomonas poae RE*1-1-14, complete genome4-hydroxybenzoate octaprenyltransferase1e-0757.4
NC_014910:3727887:375135437513543752256903Alicycliphilus denitrificans BC chromosome, complete genomeprotoheme ix farnesyltransferase2e-0757
NC_012856:2633890:263389026338902634765876Ralstonia pickettii 12D chromosome 1, complete genome4-hydroxybenzoate polyprenyl transferase3e-0756.2
NC_010682:3033646:303458130345813035423843Ralstonia pickettii 12J chromosome 1, complete sequence4-hydroxybenzoate polyprenyl transferase3e-0755.8
NC_014924:3270547:327300432730043273906903Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome4-hydroxybenzoate polyprenyl transferase2e-0653.5
NC_014507:906960:943639943639944511873Methanoplanus petrolearius DSM 11571 chromosome, complete genomegeranylgeranylglycerol- phosphategeranylgeranyltransferase4e-0652.4