Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3897624 Shigella flexneri 2a str. 301, complete genome

Start: 3897624, End: 3898676, Length: 1053

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004631:3809678:3833345383334538345291185Salmonella enterica subsp. enterica serovar Typhi Ty2, completemultidrug resistance protein D4e-131468
NC_003198:3824187:3847855384785538490391185Salmonella enterica subsp. enterica serovar Typhi str. CT18,multidrug resistance protein D4e-131468
NC_011274:3799696:3823358382335838245421185Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91multidrug resistance protein D3e-130464
NC_012779:3652737:3670300367030036714841185Edwardsiella ictaluri 93-146, complete genomemultidrug resistance protein D3e-100365
NC_015424:1603000:1631960163196016331561197Aeromonas veronii B565 chromosome, complete genomemultidrug resistance protein D9e-49194
NC_012962:1068102:1069574106957410707971224Photorhabdus asymbiotica, complete genomebicyclomycin resistance protein; transmembrane protein2e-1997.1
NC_013592:3212834:3229175322917532303711197Dickeya dadantii Ech586, complete genomedrug resistance transporter, Bcr/CflA subfamily1e-1377.8
NC_012660:3320330:3322717332271733239251209Pseudomonas fluorescens SBW25 chromosome, complete genometransporter2e-1377
NC_016816:1545354:1579510157951015806821173Pantoea ananatis LMG 5342, complete genomebicyclomycin resistance protein2e-1273.9
NC_008702:4064470:4090917409091740921131197Azoarcus sp. BH72, complete genomeputative bicyclomycin resistance protein3e-1272.8
NC_016582:9076686:9094413909441390956061194Streptomyces bingchenggensis BCW-1 chromosome, complete genomebicyclomycin resistance protein5e-1272.4
NC_015381:2859000:2885137288513728863361200Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein7e-1271.6
NC_002927:4130697:4142606414260641438291224Bordetella bronchiseptica RB50, complete genomeputative drug resistance translocase1e-1171.2
NC_014840:76232:8778187781889831203Pantoea sp. At-9b plasmid pPAT9B03, complete sequencedrug resistance transporter, Bcr/CflA subfamily1e-1171.2
NC_010410:3606826:3673544367354436747581215Acinetobacter baumannii AYE, complete genomeputative Chloramphenicol and florfenicol resistance protein (CmlA)2e-1170.5
NC_007510:973828:9922689922689934851218Burkholderia sp. 383 chromosome 1, complete sequenceDrug resistance transporter Bcr/CflA subfamily2e-1170.1
NC_017223:2618535:2629439262943926306621224Bordetella pertussis CS chromosome, complete genomeputative drug resistance translocase2e-1170.1
NC_002929:2589202:2604803260480326060261224Bordetella pertussis Tohama I, complete genomeputative drug resistance translocase2e-1170.1
NC_002928:3715492:3727339372733937285621224Bordetella parapertussis 12822, complete genomeputative drug resistance translocase3e-1170.1
NC_014166:401815:4181864181864193581173Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter4e-1169.3
NC_007651:1726472:1745758174575817469931236Burkholderia thailandensis E264 chromosome I, complete sequencedrug resistance transporter, Bcr/CflA family9e-1168.2
NC_017506:1:2913629136303321197Marinobacter adhaerens HP15 chromosome, complete genomeBcr/CflA family multidrug resistance transporter1e-1067.8
NC_019907:539749:5705425705425717831242Liberibacter crescens BT-1 chromosome, complete genomehypothetical protein1e-1067.4
NC_014733:2851984:1408214082153381257Methylovorus sp. MP688 chromosome, complete genomedrug resistance transporter, bcr/cfla subfamily2e-1066.6
NC_006832:1125000:1129104112910411303001197Ehrlichia ruminantium str. Welgevonden, complete genomeBicyclomycin resistance protein5e-1065.9
NC_005295:1146500:1150505115050511517011197Ehrlichia ruminantium str. Welgevonden, complete genomeputative bicyclomycin resistance protein5e-1065.9
NC_006831:1112000:1118597111859711197931197Ehrlichia ruminantium str. Gardel, complete genomeBicyclomycin resistance protein5e-1065.9
NC_008245:1794629:1813227181322718144171191Francisella tularensis subsp. tularensis FSC 198, complete genomemultidrug resistance protein, membrane located4e-1065.9
NC_006570:1794832:1813430181343018146201191Francisella tularensis subsp. tularensis Schu 4, complete genomemultidrug resistance protein, membrane located4e-1065.9
NC_008369:1780945:1799118179911818002991182Francisella tularensis subsp. holarctica OSU18, complete genomeMFS family major facilitator transporter, probable multidrug resistance protein5e-1065.5
NC_010677:1784000:1800499180049918016801182Francisella tularensis subsp. mediasiatica FSC147, complete genomedrug:H+ antiporter-1 (DHA1) family protein5e-1065.5
NC_007880:1780702:1799484179948418006651182Francisella tularensis subsp. holarctica, complete genomemultidrug resistance protein, membrane located5e-1065.5
NC_009257:78291:7989379893810741182Francisella tularensis subsp. tularensis WY96-3418 chromosome,major facilitator superfamily multidrug resistance protein5e-1065.5
NC_016933:1870558:1889156188915618903371182Francisella tularensis TIGB03 chromosome, complete genomeMFS family major facilitator transporter5e-1065.5
NC_016937:1794651:1813249181324918144301182Francisella tularensis subsp. tularensis TI0902 chromosome,MFS family major facilitator transporter5e-1065.5
NC_008601:1811327:1827976182797618291571182Francisella tularensis subsp. novicida U112, complete genomedrug:H+ antiporter-1 (DHA1) family protein7e-1065.1
NC_016616:760145:7763977763977775901194Dechlorosoma suillum PS chromosome, complete genomeBcr/CflA subfamily drug resistance transporter1e-0964.3
NC_006856:26438:4060740607418661260Salmonella enterica subsp. enterica serovar Choleraesuis strchloramphenicol resistance protein1e-0963.9
NC_010524:4644587:4679798467979846810001203Leptothrix cholodnii SP-6, complete genomedrug resistance transporter, Bcr/CflA subfamily2e-0963.9
NC_009651:19909:3544735447367541308Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,chloramphenicol resistance protein2e-0963.5
NC_010067:660659:6828886828886840781191Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0963.5
NC_010410:3606826:3657942365794236592011260Acinetobacter baumannii AYE, complete genomeChloramphenicol resistance protein2e-0963.5
NC_014228:3442159:3463729346372934649191191Xenorhabdus nematophila ATCC 19061, complete genomeputative drug resistance transporter3e-0962.8
NC_015563:2702787:2706710270671027079481239Delftia sp. Cs1-4 chromosome, complete genomemajor facilitator superfamily protein4e-0962.8
NC_016445:89500:9814798147993611215Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completechloramphenicol resistance protein4e-0962.8
NC_012668:3037345:3050224305022430514381215Vibrio cholerae MJ-1236 chromosome 1, complete sequenceflorfenicol/chloramphenicol resistance protein4e-0962.8
NC_010939:405477:407493407493408266774Actinobacillus pleuropneumoniae serovar 7 str. AP76, completebicyclomycin resistance-like protein5e-0962.4
NC_009053:393700:3978743978743990701197Actinobacillus pleuropneumoniae L20, complete genomebicyclomycin resistance-like protein4e-0962.4
NC_010278:398521:4027044027044039001197Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,bicyclomycin/multidrug efflux system protein4e-0962.4
NC_012917:1840172:1888014188801418892041191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomedrug resistance transporter, Bcr/CflA subfamily7e-0962
NC_014500:1646854:1654867165486716560511185Dickeya dadantii 3937 chromosome, complete genomeputative transport transmembrane protein7e-0962
NC_006511:682863:7074477074477086371191Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCbicyclomycin resistance protein6e-0962
NC_011147:682897:7073937073937085831191Salmonella enterica subsp. enterica serovar Paratyphi A strbicyclomycin/multidrug efflux system protein6e-0962
NC_015563:2702787:2718485271848527197441260Delftia sp. Cs1-4 chromosome, complete genomemajor facilitator superfamily protein7e-0961.6
NC_014228:4360676:4371957437195743731501194Xenorhabdus nematophila ATCC 19061, complete genomeChloramphenicol resistance protein1e-0861.2
NC_017030:2728175:2731627273162727328141188Corallococcus coralloides DSM 2259 chromosome, complete genomeBcr/CflA family protein drug resistance transporter1e-0861.2
NC_014618:1593360:1611633161163316128291197Enterobacter cloacae SCF1 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter2e-0860.1
NC_011094:1435347:1469587146958714707921206Salmonella enterica subsp. enterica serovar Schwarzengrund strinner membrane transport protein YdhC4e-0859.3
NC_014210:2372813:2381520238152023828331314Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,drug resistance transporter, Bcr/CflA subfamily4e-0859.3
NC_005085:786851:7922917922917935111221Chromobacterium violaceum ATCC 12472, complete genomeprobable MFS transporter4e-0859.3
NC_012914:3315947:3329590332959033307771188Paenibacillus sp. JDR-2, complete genomemajor facilitator superfamily MFS_14e-0859.3
NC_015559:3511231:3515999351599935172371239Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter6e-0858.9
NC_013406:3975512:3994353399435339955821230Paenibacillus sp. Y412MC10 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter5e-0858.9
NC_016831:1236786:1271046127104612722511206Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative integral membrane transport protein5e-0858.9
NC_011080:1470794:1505113150511315063181206Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane transport protein YdhC5e-0858.9
NC_016863:1429516:1463840146384014650451206Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1inner membrane transport protein YdhC7e-0858.5
NC_016860:1469066:1503360150336015045651206Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane transport protein YdhC7e-0858.5
NC_016856:1481325:1515649151564915168541206Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sinner membrane transport protein YdhC7e-0858.5
NC_003197:1471349:1505673150567315068781206Salmonella typhimurium LT2, complete genomeputative transport protein7e-0858.5
NC_013943:124500:1292961292961304771182Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter1e-0758.2
NC_009654:4624459:4632435463243546336791245Marinomonas sp. MWYL1, complete genomeBcr/CflA subfamily drug resistance transporter1e-0757.8
NC_015434:1173794:1174755117475511759781224Verrucosispora maris AB-18-032 chromosome, complete genomeBcr/CflA subfamily drug resistance transporter1e-0757.8
NC_015164:2859000:2890889289088928920911203Bacteroides salanitronis DSM 18170 chromosome, complete genomedrug resistance transporter, Bcr/CflA subfamily2e-0757.4
NC_007799:284058:3063883063883075961209Ehrlichia chaffeensis str. Arkansas, complete genomedrug resistance transporter, Bcr/CflA family2e-0757.4
NC_003912:30265:5165651656528581203Campylobacter jejuni RM1221, complete genomedrug resistance transporter, Bcr/CflA family2e-0757
NC_002163:29726:5266552665538671203Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative efflux protein2e-0757
NC_017279:29737:5290052900541021203Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeMFS family drug resistance transporter2e-0757
NC_017281:30261:5093850938521401203Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative efflux protein2e-0756.6
NC_013282:2026083:2074229207422920754041176Cronobacter turicensis, complete genomeInner membrane transport protein ydhC2e-0756.6
NC_020209:1986503:2014270201427020154901221Pseudomonas poae RE*1-1-14, complete genomeBcr/CflA subfamily drug resistance transporter3e-0756.6
NC_012108:1694817:1712072171207217132741203Desulfobacterium autotrophicum HRM2, complete genomedrug resistance transporter (permease of major facilitator superfamily)3e-0756.2
NC_010184:3213347:3214033321403332152321200Bacillus weihenstephanensis KBAB4, complete genomedrug resistance transporter, Bcr/CflA subfamily3e-0756.2
NC_013223:1090397:1116488111648811176541167Desulfohalobium retbaense DSM 5692, complete genomedrug resistance transporter, Bcr/CflA subfamily6e-0755.5
NC_018515:3169973:3183519318351931847451227Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeBcr/CflA family multidrug resistance transporter5e-0755.5
NC_012881:1062629:1072105107210510732591155Desulfovibrio salexigens DSM 2638, complete genomedrug resistance transporter, Bcr/CflA subfamily7e-0755.1
NC_010067:1507823:1509890150989015110951206Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-0755.1
NC_020126:10319500:1033460210334602103358281227Myxococcus stipitatus DSM 14675, complete genomeBcr/CflA subfamily drug resistance transporter9e-0754.7
NC_020209:2838582:2846079284607928472901212Pseudomonas poae RE*1-1-14, complete genomemajor facilitator family transporter1e-0654.3
NC_015873:1119500:1135813113581311370151203Megasphaera elsdenii DSM 20460, complete genomeDrug resistance transporter1e-0654.3
NC_009654:304000:3103693103693115621194Marinomonas sp. MWYL1, complete genomeBcr/CflA subfamily drug resistance transporter2e-0653.9
NC_004369:437594:4375944375944388111218Corynebacterium efficiens YS-314, complete genomeputative transport protein2e-0653.9
NC_007645:4356865:4358896435889643600921197Hahella chejuensis KCTC 2396, complete genomePermease of the major facilitator superfamily2e-0653.9
NC_020210:2969862:2999622299962230008331212Geobacillus sp. GHH01, complete genomemajor facilitator superfamily protein2e-0653.5
NC_010407:151599:1716071716071729201314Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative membrane transport protein3e-0653.1
NC_009436:1466580:1468091146809114693261236Enterobacter sp. 638, complete genomemajor facilitator transporter3e-0653.1
NC_009648:4497749:4513408451340845145861179Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomemultidrug efflux system protein MdtL4e-0652.4
NC_020300:1241968:1243103124310312442901188Bartonella australis Aust/NH1, complete genomemultidrug resistance transporter, Bcr/CflA family5e-0652.4
NC_005945:754517:7673547673547685351182Bacillus anthracis str. Sterne, complete genomemajor facilitator family transporter6e-0652
NC_008767:1739344:1739344173934417407231380Neisseria meningitidis FAM18, complete genomeputative integral membrane efflux protein6e-0652
NC_012947:2898179:2913561291356129147931233Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completemajor facilitator superfamily MFS_18e-0651.6
NC_011601:846358:8480558480558492871233Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomemultidrug efflux system protein8e-0651.6