Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3822575 Shigella flexneri 2a str. 301, complete genome

Start: 3822575, End: 3823522, Length: 948

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:4862218:486396048639604864907948Escherichia coli ED1a chromosome, complete genomeaerobactin siderophore biosynthesis N(6)-hydroxylysine acetylase0649
NC_004431:3409389:346647034664703467417948Escherichia coli CFT073, complete genomeIucB protein0647
NC_011751:3453683:348956934895693490516948Escherichia coli UMN026 chromosome, complete genomeaerobactin siderophore biosynthesis protein, N(6)-hydroxylysine acetylase0647
NC_016860:3995445:401984940198494020796948Salmonella enterica subsp. enterica serovar Typhimurium strAerobactin siderophore biosynthesis protein IucB9e-179625
NC_005810:3917254:391899939189993919949951Yersinia pestis biovar Microtus str. 91001, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_008150:317903:317903317903318853951Yersinia pestis Antiqua, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_009381:588137:587203587203588153951Yersinia pestis Pestoides F chromosome, complete genomesiderophore biosynthesis protein IucB7e-121433
NC_009708:853063:873836873836874786951Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeaerobactin siderophore biosynthesis protein IucB7e-121433
NC_009708:874770:873836873836874786951Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeaerobactin siderophore biosynthesis protein IucB7e-121433
NC_014029:961522:960588960588961538951Yersinia pestis Z176003 chromosome, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_017154:902739:902739902739903689951Yersinia pestis D106004 chromosome, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_017160:905783:904849904849905799951Yersinia pestis D182038 chromosome, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_017168:3286:503150315981951Yersinia pestis A1122 chromosome, complete genomeputative siderophore biosynthesis protein IucB7e-121433
NC_017265:809943:809009809009809959951Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative siderophore biosynthesis protein IucB7e-121433
NC_010465:893921:892987892987893937951Yersinia pseudotuberculosis YPIII, complete genomeputative siderophore biosynthesis protein IucB3e-120431
NC_006155:3846315:384536838453683846318951Yersinia pseudotuberculosis IP 32953, complete genomeputative siderophore biosynthesis protein IucB3e-120431
NC_010465:868402:892987892987893937951Yersinia pseudotuberculosis YPIII, complete genomeputative siderophore biosynthesis protein IucB3e-120431
NC_021150:2546000:2554430255443025554881059Azotobacter vinelandii CA6, complete genomehypothetical protein6e-57221
NC_012560:2546000:2554418255441825554761059Azotobacter vinelandii DJ, complete genomehypothetical protein6e-57221
NC_013960:1808523:183274118327411833739999Nitrosococcus halophilus Nc4 chromosome, complete genomesiderophore biosynthesis protein1e-56220
NC_008260:2340824:238015423801542381140987Alcanivorax borkumensis SK2, complete genomesiderophore biosynthesis protein5e-53208
NC_014323:2680085:2683634268363426846381005Herbaspirillum seropedicae SmR1 chromosome, complete genomeacetyltransferase-like protein1e-50200
NC_010995:2123909:2133809213380921348581050Cellvibrio japonicus Ueda107, complete genomeN6-hydroxylysine acetyl transferase5e-50198
NC_007484:2045500:205378220537822054606825Nitrosococcus oceani ATCC 19707, complete genomeAerobactin siderophore biosynthesis protein IucB6e-44178
NC_014315:1396990:1403828140382814063442517Nitrosococcus watsoni C-113 chromosome, complete genomeIucA/IucC family protein7e-43174
NC_010474:19256:284322843229031600Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequenceSiderophore biosynthesis protein, IucB family; acetyl transferase1e-26120
NC_014814:3926676:394566039456603946259600Mycobacterium sp. Spyr1 chromosome, complete genomeSiderophore biosynthesis protein domain1e-1584.3
NC_010474:19256:2340423404258452442Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequenceSiderophore biosynthesis protein, IucA / IucC family5e-1478.6
NC_005966:2699483:270749327074932708080588Acinetobacter sp. ADP1, complete genomeputative siderophore biosynthesis protein; putative acetyltransferase3e-0653.1
NC_017223:2618535:262381126238112624416606Bordetella pertussis CS chromosome, complete genomealcaligin biosynthesis protein4e-0652.4
NC_002929:2589202:259917525991752599780606Bordetella pertussis Tohama I, complete genomealcaligin biosynthesis protein4e-0652.4
NC_002927:4130697:413697841369784137583606Bordetella bronchiseptica RB50, complete genomealcaligin biosynthesis protein4e-0652.4
NC_002928:3715492:372171137217113722316606Bordetella parapertussis 12822, complete genomealcaligin biosynthesis protein4e-0652.4