Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3788075 Shigella flexneri 2a str. 301, complete genome

Start: 3788075, End: 3788899, Length: 825

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007575:973559:983392983392984237846Sulfurimonas denitrificans DSM 1251, complete genomeDNA-damage-inducible protein D1e-106386
NC_018866:2484500:248977724897772490613837Dehalobacter sp. DCA chromosome, complete genomeDNA-damage-inducible protein D1e-91336
NC_014752:1530000:153848515384851539336852Neisseria lactamica ST-640, complete genomeDNA damage inducible protein2e-84312
NC_015873:1193843:121419512141951215028834Megasphaera elsdenii DSM 20460, complete genomehypothetical protein4e-83308
NC_015152:307500:309676309676310530855Spirochaeta sp. Buddy chromosome, complete genomeDNA-damage-inducible protein2e-70265
NC_007086:1457531:146557614655761466436861Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA-damage-inducible protein d8e-43174
NC_003902:3430051:344435934443593445219861Xanthomonas campestris pv. campestris str. ATCC 33913, completeDNA-damage-inducible protein d8e-43174
NC_010688:1435694:144371514437151444569855Xanthomonas campestris pv. campestris, complete genomeputative DNA-related protein9e-42170
NC_014365:2810405:283375928337592834616858Desulfarculus baarsii DSM 2075 chromosome, complete genomeDNA-damage-inducible protein D6e-38157
NC_014251:243700:265211265211265771561Streptococcus pneumoniae TCH8431/19A chromosome, complete genomeDNA-damage-inducible protein9e-37154
NC_013410:1491000:150018415001841501020837Fibrobacter succinogenes subsp. succinogenes S85 chromosome,DNA-damage-inducible protein D4e-31135
NC_014738:2094000:212614721261472126971825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,DNA-damage-inducible protein6e-31134
NC_017045:119046:131396131396132220825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,DNA-damage-inducible protein6e-31134
NC_011601:1039500:105084810508481051690843Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-damage-inducible protein1e-29130
NC_016803:2431672:245171824517182451972255Desulfovibrio desulfuricans ND132 chromosome, complete genome2e-21102
NC_015311:2059879:207734620773462077690345Prevotella denticola F0289 chromosome, complete genomehypothetical protein2e-1789.7
NC_016801:1123733:114556111455611146412852Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeDNA-damage-inducible protein D2e-1686.7
NC_006576:856014:861831861831862478648Synechococcus elongatus PCC 6301, complete genomeDNA-damage-inducible protein2e-1582.8
NC_007604:743738:758390758390759037648Synechococcus elongatus PCC 7942, complete genomeDNA-damage-inducible protein2e-1582.8
NC_014387:1106901:110873211087321108968237Butyrivibrio proteoclasticus B316 chromosome 1, complete genomehypothetical protein2e-1376.6
NC_018607:135612:153423153423153944522Brachyspira pilosicoli B2904 chromosome, complete genomeDNA-damage-inducible protein D7e-1374.7
NC_018607:135612:153980153980154327348Brachyspira pilosicoli B2904 chromosome, complete genomeDNA-damage-inducible proteinD4e-0755.5