Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3737411 Shigella flexneri 2a str. 301, complete genome

Start: 3737411, End: 3737773, Length: 363

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:3988351:400702740070274007491465Escherichia coli SMS-3-5, complete genomehypothetical protein2e-65246
NC_009800:3787320:379791237979123798274363Escherichia coli HS, complete genomehypothetical protein5e-65245
AP010958:4707712:471199247119924712354363Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted inner membrane protein5e-65245
NC_012759:3648500:365773136577313658093363Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein5e-65245
NC_012947:126596:138000138000138362363Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein5e-65245
NC_012967:3696877:370607537060753706437363Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein5e-65245
NC_013353:4707712:471199247119924712354363Escherichia coli O103:H2 str. 12009, complete genomeinner membrane protein5e-65245
CP002185:3964500:397437239743723974734363Escherichia coli W, complete genomepredicted inner membrane protein9e-65244
CU928145:4131924:414327241432724143634363Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein9e-65244
CP002516:119935:131339131339131701363Escherichia coli KO11, complete genomehypothetical protein9e-65244
NC_009801:4073968:408454440845444084906363Escherichia coli E24377A, complete genomehypothetical protein9e-65244
NC_011748:4131924:414327241432724143634363Escherichia coli 55989, complete genomeconserved hypothetical protein; putative inner membrane protein9e-65244
NC_010468:111504:123082123082123444363Escherichia coli ATCC 8739, complete genomehypothetical protein9e-65244
NC_011415:4006500:401644140164414016803363Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-65244
NC_016902:119935:131339131339131701363Escherichia coli KO11FL chromosome, complete genomehypothetical protein9e-65244
NC_012947:126596:152055152055152378324Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-42171
NC_009832:110239:124594124594124917324Serratia proteamaculans 568, complete genomehypothetical protein2e-40164
NC_009663:2056166:206342520634252063826402Sulfurovum sp. NBC37-1, complete genomehypothetical protein4e-30129