Pre_GI: BLASTP Hits

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Query: NC_004337:1783645:1793907 Shigella flexneri 2a str. 301, complete genome

Start: 1793907, End: 1794896, Length: 990

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1835108:184645018464501847439990Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-172603
NC_008258:1784637:179323117932311794220990Shigella flexneri 5 str. 8401, complete genomeputative glycoportein5e-172603
NC_004741:1823000:183085318308531831842990Shigella flexneri 2a str. 2457T, complete genomeputative glycoprotein5e-172603
NC_011750:1809943:1819362181936218206181257Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-111401
NC_010498:1700447:1708354170835417096101257Escherichia coli SMS-3-5, complete genomehypothetical protein1e-110399
NC_011751:1714131:1739999173999917412941296Escherichia coli UMN026 chromosome, complete genomehypothetical protein5e-110397
NC_013941:1857724:1868066186806618693251260Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-107388
NC_011353:1971145:1978202197820219794611260Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeleucine-rich repeat protein4e-106384
NC_013008:1971662:1977178197717819784371260Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector5e-106384
NC_002695:2056545:2063602206360220648611260Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-106384
NC_002655:2015000:2023612202361220248711260Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-106384
NC_007384:1737885:1746807174680717479701164Shigella sonnei Ss046, complete genomehypothetical protein3e-97355
NC_016822:1818897:1826129182612918272921164Shigella sonnei 53G, complete genomehypothetical protein3e-97355
NC_013941:1857724:186938818693881870056669Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-41170
NC_013008:1971662:197850019785001979168669Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-41170
NC_011353:1971145:197952419795241980192669Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-41170
NC_002695:2056545:206492420649242065592669Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-41170
NC_011750:1809943:1820681182068118219461266Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-39164
NC_010498:1700447:1707032170703217082911260Escherichia coli SMS-3-5, complete genomehypothetical protein1e-39163
NC_007606:1515403:1526379152637915274011023Shigella dysenteriae Sd197, complete genomehypothetical protein7e-39161
NC_002655:2015000:202291720229172023549633Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-34145
NC_016822:1818897:182838818283881828522135Shigella sonnei 53G, complete genomeglycoprotein with ribonuclease inhibitor domain (yddK) (modular protein)1e-0860.8
NC_002973:369650:3696503696503715061857Listeria monocytogenes str. 4b F2365, complete genomecell wall surface anchor family protein8e-0651.6