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Query: NC_004129:4434259 Pseudomonas fluorescens Pf-5, complete genome

Start: 4434259, End: 4458627, Length: 24369

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015379:60239266023926604728023355Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-84321BLASTN svgBLASTP svg
NC_007492:33840773384077341717433098Pseudomonas fluorescens PfO-1, complete genome1e-45192BLASTN svgBLASTP svg
NC_011894:58563758563762859942963Methylobacterium nodulans ORS 2060, complete genome3e-40174BLASTN svgBLASTP svg
NC_007643:889755*88975593094641192Rhodospirillum rubrum ATCC 11170, complete genome6e-32147BLASTN svgBLASTP svg
NC_010501:73436373436376909934737Pseudomonas putida W619, complete genome6e-23117BLASTN svgBLASTP svg
NC_004129:24407442440744246509824355Pseudomonas fluorescens Pf-5, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008786:18688186884262323936Verminephrobacter eiseniae EF01-2, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_003911:633393*63339366026126869Silicibacter pomeroyi DSS-3, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015563:31328331328333492521643Delftia sp. Cs1-4 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011894:25036392503639252209918461Methylobacterium nodulans ORS 2060, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009512:59209605920960595518534226Pseudomonas putida F1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008752:35955163595516362337527860Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004129:4093610*4093610411954425935Pseudomonas fluorescens Pf-5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011894:1499229*1499229152597926751Methylobacterium nodulans ORS 2060, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006677:1255079*1255079128032225244Gluconobacter oxydans 621H, complete genome3e-0661.9BLASTN svgBLASTP svg