Some Help

Query: NC_004129:4368356 Pseudomonas fluorescens Pf-5, complete genome

Start: 4368356, End: 4387281, Length: 18926

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012660:31165003116500314096024461Pseudomonas fluorescens SBW25 chromosome, complete genome0747BLASTN svgBLASTP svg
NC_004129:2328491*2328491236123032740Pseudomonas fluorescens Pf-5, complete genome5e-75289BLASTN svgBLASTP svg
NC_011770:2690501*2690501273396743467Pseudomonas aeruginosa LESB58, complete genome8e-34153BLASTN svgBLASTP svg
NC_002927:37168943716894377039253499Bordetella bronchiseptica RB50, complete genome8e-34153BLASTN svgBLASTP svg
NC_002927:23385492338549238749248944Bordetella bronchiseptica RB50, complete genome8e-34153BLASTN svgBLASTP svg
NC_009648:1541699*1541699160010958411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_013850:21823372182337224909966763Klebsiella variicola At-22 chromosome, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_015663:45221094522109454904226934Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_011770:14317401431740145393822199Pseudomonas aeruginosa LESB58, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015379:4691868*4691868471845126584Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,6e-0763.9BLASTN svgBLASTP svg
NC_015379:46303674630367466559935233Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-0661.9BLASTN svgBLASTP svg